View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_5 (Length: 551)
Name: NF10211_low_5
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 20 - 533
Target Start/End: Complemental strand, 18056970 - 18056456
Alignment:
| Q |
20 |
gcaaatgattatttgagttcttggcgtgcaggattgagagttgcaattgtgcacaactatttaactagctgggctgtgggactttcaacctttggggctt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18056970 |
gcaaatgattatttgagttcttggcgtgcaggattgagagttgcaattgtgcacaactatttaactagctgggctgtgggactttcaacctttggggctt |
18056871 |
T |
|
| Q |
120 |
ttttggctctttactttacattcatacaagcaatttgtgagattaagaacacattcagtacaatgaaggaagccaagttcagttcagtgttcaaaggttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18056870 |
ttttggctctttactttacattcatacaagcaatttgtgagattaagaacacattcagtacaatgaaggaagccaagttcagttcagtgttcaaaggttt |
18056771 |
T |
|
| Q |
220 |
gttcattcttccatttgatgaccctcctcactctccagaaatccatcatgtaggtaaggatcatgatgtctctactaggagtgcttcttaaaattccatc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18056770 |
gttcattcttccatttgatgaccctcctcactctccagaaatccatcatgtaggtaaggatcatgatgtctccactaggagtgcttcttaaaattccatc |
18056671 |
T |
|
| Q |
320 |
tttttcactctcttttcaataagtcggtcctagtttactcttccattttcttcattgagaggaaggttt-ggataaatttttgacacaaaatcatccatt |
418 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
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| T |
18056670 |
tttttcactatcttttcaataagtcggtcctagtttactcttccattttcttcattgagaggaaggtttaggataaatttttgacacaaaatcacctatt |
18056571 |
T |
|
| Q |
419 |
tccatctttatctccctattttagtctaaattagtaagttttacatagatctagnnnnnnncccttgtgatttcgttgtcaaagggcgatgttgcctttt |
518 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| |
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| T |
18056570 |
tccatctttatctccatattttagtctaaattagtaagttttacatagatctagtttttttcccttgtgatttcgttgtcaaagggtgatgttgtgtttt |
18056471 |
T |
|
| Q |
519 |
gcagcgttgtatgat |
533 |
Q |
| |
|
||||||||||||||| |
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| T |
18056470 |
gcagcgttgtatgat |
18056456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 15733580 - 15733445
Alignment:
| Q |
23 |
aatgattatttgagttcttggcgtgcaggattgagagttgcaattgtgcacaactatttaactagctgggctgtgggactttcaacctttggggcttttt |
122 |
Q |
| |
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||||| |||||| ||| ||||||||| |||| |||| | | |||| || ||||||||||| || ||||||||||||||||| || || || ||| ||| |
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| T |
15733580 |
aatgagtatttgggttgttggcgtgcgagattcagagcttcgcttgttcataactatttaacaagttgggctgtgggactttctacattaggtgctcttt |
15733481 |
T |
|
| Q |
123 |
tggctctttactttacattcatacaagcaatttgtg |
158 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| |
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|
| T |
15733480 |
tggcactttattttacattcatacaagcaatttgtg |
15733445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 15727561 - 15727434
Alignment:
| Q |
23 |
aatgattatttgagttcttggcgtgcaggattgagagttgcaattgtgcacaactatttaactagctgggctgtgggactttcaacctttggggcttttt |
122 |
Q |
| |
|
||||| |||||| ||| ||||||||| |||| |||| | | |||| || ||||||||||| || ||||||||||||||||| || | || ||| ||| |
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| T |
15727561 |
aatgagtatttgggttgttggcgtgcgagattcagagcttcgcttgttcataactatttaacaagttgggctgtgggactttctacaataggtgctcttt |
15727462 |
T |
|
| Q |
123 |
tggctctttactttacattcatacaagc |
150 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
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| T |
15727461 |
tggctctttattttacattcatacaagc |
15727434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 472
Target Start/End: Complemental strand, 25631745 - 25631639
Alignment:
| Q |
366 |
tttcttcattgagaggaaggtttggataaatttttgacacaaaatcatccatttccatctttatctccctattttagtctaaattagtaagttttacata |
465 |
Q |
| |
|
||||||||||||| || | ||||| | |||||||||| |||||||||| | ||||||||| |||| |||||| | ||||||| ||| | ||| ||||| |
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|
| T |
25631745 |
tttcttcattgaggggtggttttgggtcaatttttgacctaaaatcatccctctccatctttttctctctatttcaatctaaataagtgattttcacata |
25631646 |
T |
|
| Q |
466 |
gatctag |
472 |
Q |
| |
|
||||||| |
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|
| T |
25631645 |
gatctag |
25631639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 472
Target Start/End: Original strand, 4172423 - 4172529
Alignment:
| Q |
366 |
tttcttcattgagaggaaggtttggataaatttttgacacaaaatcatccatttccatctttatctccctattttagtctaaattagtaagttttacata |
465 |
Q |
| |
|
||||||||||||| || | ||||| | |||| || ||| |||||||||||| | ||||||| |||| |||||| | ||||||| ||| | ||| ||||| |
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|
| T |
4172423 |
tttcttcattgaggggtggttttgggtcaattcttaacataaaatcatccatcttcatctttttctctctatttcaatctaaataagtgattttcacata |
4172522 |
T |
|
| Q |
466 |
gatctag |
472 |
Q |
| |
|
||||||| |
|
|
| T |
4172523 |
gatctag |
4172529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 472
Target Start/End: Original strand, 35580315 - 35580430
Alignment:
| Q |
358 |
tcttccattttcttcattgagaggaaggttt-ggataaatttttgacacaaaatcatccatttccatctttatctccctattttagtctaaattagtaag |
456 |
Q |
| |
|
||||||| |||||||||||||||| ||||| || | ||||||||||| ||||||| ||| | ||||||| |||| |||||| | | ||||| ||| | |
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| T |
35580315 |
tcttccaatttcttcattgagagggtggttttgggtcaatttttgacataaaatcactcatcttcatctttttctctctatttcaatttaaataagtgat |
35580414 |
T |
|
| Q |
457 |
ttttacatagatctag |
472 |
Q |
| |
|
||| |||||||||||| |
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|
| T |
35580415 |
tttcacatagatctag |
35580430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 472
Target Start/End: Original strand, 33109679 - 33109799
Alignment:
| Q |
352 |
gtttactcttccattttcttcattgagaggaaggtttggataaatttttgacacaaaatcatccatttccatctttatctccctattttagtctaaatta |
451 |
Q |
| |
|
|||| |||||||| |||||||||||| || | ||||| | |||||||||| |||||| ||||| | ||||||| |||| ||||| | ||||||| | |
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| T |
33109679 |
gttttctcttccagtttcttcattgacgggtggttttgggtcaatttttgacctaaaatcgtccatcttcatctttttctctttatttcaatctaaataa |
33109778 |
T |
|
| Q |
452 |
gtaagttttacatagatctag |
472 |
Q |
| |
|
|| | ||| |||||||||||| |
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|
| T |
33109779 |
gtgattttcacatagatctag |
33109799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 472
Target Start/End: Complemental strand, 18569542 - 18569422
Alignment:
| Q |
352 |
gtttactcttccattttcttcattgagaggaaggtttggataaatttttgacacaaaatcatccatttccatctttatctccctattttagtctaaatta |
451 |
Q |
| |
|
|||| |||||||| ||||||||||||| || | ||||| | ||||||||||| |||||| | | | ||||||| |||| |||||| | ||||||| | |
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|
| T |
18569542 |
gttttctcttccagtttcttcattgaggggtggttttgggtcaatttttgacaagaaatcacctgtcttcatctttttctctctatttcaatctaaataa |
18569443 |
T |
|
| Q |
452 |
gtaagttttacatagatctag |
472 |
Q |
| |
|
|| | ||| |||||||||||| |
|
|
| T |
18569442 |
gtgattttcacatagatctag |
18569422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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