View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10211_low_52 (Length: 243)

Name: NF10211_low_52
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10211_low_52
NF10211_low_52
[»] chr3 (6 HSPs)
chr3 (1-113)||(42067024-42067136)
chr3 (1-113)||(21443501-21443613)
chr3 (1-113)||(50012845-50012957)
chr3 (1-113)||(21444403-21444515)
chr3 (1-113)||(50011949-50012061)
chr3 (1-93)||(42066144-42066236)
[»] chr4 (2 HSPs)
chr4 (109-230)||(47802470-47802591)
chr4 (77-113)||(5929191-5929227)
[»] chr1 (1 HSPs)
chr1 (77-118)||(42843880-42843921)
[»] chr7 (2 HSPs)
chr7 (77-113)||(9124408-9124444)
chr7 (77-113)||(9123614-9123650)
[»] chr5 (1 HSPs)
chr5 (76-113)||(7087968-7088005)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 42067024 - 42067136
Alignment:
Q  1 tgctatggtgtgggagacatatgataaaatttaatacaacctcaaaatgtaacctataatcacatgtggtccatcatgggaagattttcacctttcccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42067024 tgctatggtgtgggagacatatgataaaatttaatacaacctcaaaatctaacctataatcacatgtggtccatcatgggaagattttcacctttcccat 42067123  T
Q  101 gtgaaatggcacc 113  Q
    |||||||||||||    
T  42067124 gtgaaatggcacc 42067136  T

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Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 21443613 - 21443501
Alignment:
Q  1 tgctatggtgtgggagacatatgataaaatttaatacaacctcaaaatgtaacctataatcacatgtggtccatcatgggaagattttcacctttcccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21443613 tgctatggtgtgggagacatatgataaaatttaatacaacctcaaaatctaacctataatcacatgtggtccatcatgggaagattttcacctttcccat 21443514  T
Q  101 gtgaaatggcacc 113  Q
    |||||||| ||||    
T  21443513 gtgaaatgacacc 21443501  T

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Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 50012845 - 50012957
Alignment:
Q  1 tgctatggtgtgggagacatatgataaaatttaatacaacctcaaaatgtaacctataatcacatgtggtccatcatgggaagattttcacctttcccat 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50012845 tgctatggtgtgggagacatatgataaaatttaattcaacctcaaaatctaacctataatcacatgtggtctatcatgggaagattttcacctttcccat 50012944  T
Q  101 gtgaaatggcacc 113  Q
    |||||||||||||    
T  50012945 gtgaaatggcacc 50012957  T

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Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 21444403 - 21444515
Alignment:
Q  1 tgctatggtgtgggagacatatgataaaatttaatacaacctcaaaatgtaacctataatcacatgtggtccatcatgggaagattttcacctttcccat 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  21444403 tgctatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtttatcatgggaagattttcacctttcccat 21444502  T
Q  101 gtgaaatggcacc 113  Q
    |||||| ||||||    
T  21444503 gtgaaaaggcacc 21444515  T

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Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 50012061 - 50011949
Alignment:
Q  1 tgctatggtgtgggagacatatgataaaatttaatacaacctcaaaatgtaacctataatcacatgtggtccatcatgggaagattttcacctttcccat 100  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50012061 tgctatggtgtgggagacatataataaaatttaattcaacctcaagatctaacttataatcacatgtggtccatcatgggaagattttcacctttcccat 50011962  T
Q  101 gtgaaatggcacc 113  Q
     ||||| ||||||    
T  50011961 atgaaaaggcacc 50011949  T

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Target: chr3; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 42066236 - 42066144
Alignment:
Q  1 tgctatggtgtgggagacatatgataaaatttaatacaacctcaaaatgtaacctataatcacatgtggtccatcatgggaagattttcacct 93  Q
    |||||||||||||||||||||| |||||||||||||||||||||| || ||| |||||||||||||||||| |||||| ||||||||||||||    
T  42066236 tgctatggtgtgggagacatataataaaatttaatacaacctcaagatctaatctataatcacatgtggtctatcatgagaagattttcacct 42066144  T

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Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 109 - 230
Target Start/End: Original strand, 47802470 - 47802591
Alignment:
Q  109 gcaccatgaatgtgatgacagatttgtagttttgagatataacaaatgacctactaaccttttataagatatcaatgaaaggggcattgtcatcttgatg 208  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  47802470 gcacaatgaatgtgatgtcagatttgtagttttgagatataacaaatgacctattaaccttttataagatatcaatgaaaggggaattgtcatcttgatg 47802569  T
Q  209 cattttaatagaaggaccaaat 230  Q
    ||||||||||||||||||||||    
T  47802570 cattttaatagaaggaccaaat 47802591  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 5929227 - 5929191
Alignment:
Q  77 tgggaagattttcacctttcccatgtgaaatggcacc 113  Q
    ||||||| |||||||||||||||||||||||||||||    
T  5929227 tgggaaggttttcacctttcccatgtgaaatggcacc 5929191  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 42843921 - 42843880
Alignment:
Q  77 tgggaagattttcacctttcccatgtgaaatggcaccatgaa 118  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  42843921 tgggaaggttttcacctttcccatgtgaaatggcaccttgaa 42843880  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 9124408 - 9124444
Alignment:
Q  77 tgggaagattttcacctttcccatgtgaaatggcacc 113  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9124408 tgggaaggttttcacctttcccatgtgaaatggcacc 9124444  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 9123650 - 9123614
Alignment:
Q  77 tgggaagattttcacctttcccatgtgaaatggcacc 113  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  9123650 tgggaagattttcaccttttccatgtgaaatgccacc 9123614  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 7087968 - 7088005
Alignment:
Q  76 atgggaagattttcacctttcccatgtgaaatggcacc 113  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  7087968 atgggaagattttaacctttcccatgtgaaatgccacc 7088005  T

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