View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_53 (Length: 242)
Name: NF10211_low_53
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 17821237 - 17821037
Alignment:
| Q |
19 |
aattgcgagttcattttctctgtaaagaaagggaaattgttataagttgttattaattacagtggcctaaccaaagagattaatatggatatgaagacaa |
118 |
Q |
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| T |
17821237 |
aattgcgagttcattttctctgtaaagaaagggaaattgttataagttgttattaattacagtggcctaaccaaagagattaatatggatatgaagacaa |
17821138 |
T |
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| Q |
119 |
gcgcaaataacttaaaagccagatgaaatcatacattagttaatttttcacaggtatataaacaaaccataacataaagcactttcaacattcatgagct |
218 |
Q |
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| T |
17821137 |
gcgcaaataacttaaaa-caagatgaaatcatacattagttaatttttcacaggtatataaacaaaccataacataaagcactatcaacattcatgagct |
17821039 |
T |
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| Q |
219 |
tt |
220 |
Q |
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|| |
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| T |
17821038 |
tt |
17821037 |
T |
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