View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_58 (Length: 233)
Name: NF10211_low_58
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2443064 - 2442837
Alignment:
| Q |
1 |
tgattacctcttagatttacatgtacgtgttttattggatctaaagtttctcacaaatgaattggataattctataaacaatcatgggctacacttgatt |
100 |
Q |
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| T |
2443064 |
tgattacctctaagatttacatgtacgtgttttattggatctaaagtttctcacaaatgaattggataattctataaacaatcatgggctacacttgatt |
2442965 |
T |
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| Q |
101 |
tgtatatgggaaaaataacccacaaaataattggaataaattattacaaaaatatgtgtgaattccttactcaacaatatttgtatatgagtttgttaac |
200 |
Q |
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| T |
2442964 |
tgtatatgggaaaaataacccacaaaataattggaataaattattacaaaaatatgtgtgaattccttactcaacaatatttgtatatgagtttgttaac |
2442865 |
T |
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| Q |
201 |
cttgtttttgtttcaagttcatctcact |
228 |
Q |
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| T |
2442864 |
cttgtttttgtttcaagttcatcacact |
2442837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 50984027 - 50984157
Alignment:
| Q |
27 |
gtgttttattggatctaaagtttctcacaaatgaattggataattctataaacaatcatggg-ctacacttgatttgtatatgggaaaaataacccacaa |
125 |
Q |
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| T |
50984027 |
gtgttttattggatctaaagtttctcgcaattagat-ggataattctataaacaatcatggggctacacttgatctgtttatgggaaaaataacccac-a |
50984124 |
T |
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| Q |
126 |
aataattggaataaattattacaaaaatatgtg |
158 |
Q |
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| T |
50984125 |
aataattggagtaaattattgcaaaaatgtgtg |
50984157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 34019696 - 34019752
Alignment:
| Q |
29 |
gttttattggatctaaagtttctcacaaatgaattggataattctataaacaatcatggg |
88 |
Q |
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| T |
34019696 |
gttttattggatc--aagtttctcacaattggat-ggataatactataaacaatcatggg |
34019752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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