View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_59 (Length: 233)
Name: NF10211_low_59
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 6458366 - 6458578
Alignment:
| Q |
5 |
actttctaatttccaccaacattttcaaaagatcactaattcaatttatcttaactaaaaaattgttcatttgaaaggatatctatgatataattctaaa |
104 |
Q |
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| T |
6458366 |
actttctaatttccaccaacattttcaaaagatcactaattcaatttatcttaactaaaaaattgttcatttgaaaggatatctatgatgtaattctaaa |
6458465 |
T |
|
| Q |
105 |
tttgattatcgaaccacataaactcaagagactatcgtacggtaggtgtggataatgtagtgatgtgtggagaaattga-nnnnnnncttttgcatccac |
203 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |
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| T |
6458466 |
tttgattattgaaccacataaactcaagagactatcgtacggtaggtgtggataatgtggtgatgtgtggagaaattgattttttttcttttgcacccac |
6458565 |
T |
|
| Q |
204 |
cctaattcccaac |
216 |
Q |
| |
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||||||||||||| |
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| T |
6458566 |
cctaattcccaac |
6458578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 34216256 - 34216130
Alignment:
| Q |
5 |
actttctaatttccaccaacattttcaaaagatcactaattcaatttatcttaactaaaaaattgttcatttgaaaggatatctatgatataattctaaa |
104 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||| | |||||||| ||| ||||||||| | | ||| |||||| | |||||| ||| |||| |
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| T |
34216256 |
actttctaattttcaccaacatttttaaaagatcactaattaattttatcttcgctagaaaattgtttactagaagggatatatgtgatatgattttaaa |
34216157 |
T |
|
| Q |
105 |
tttgattatcgaaccacataaactcaa |
131 |
Q |
| |
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|||||||| ||||| |||||||||| |
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| T |
34216156 |
gttgattattgaacccgataaactcaa |
34216130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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