View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10211_low_67 (Length: 205)

Name: NF10211_low_67
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10211_low_67
NF10211_low_67
[»] chr1 (9 HSPs)
chr1 (14-187)||(47710813-47710986)
chr1 (14-187)||(47757692-47757865)
chr1 (14-187)||(47700527-47700700)
chr1 (14-187)||(47715524-47715697)
chr1 (14-187)||(47743291-47743464)
chr1 (35-176)||(47771507-47771648)
chr1 (35-175)||(47775660-47775800)
chr1 (89-178)||(6525859-6525948)
chr1 (93-177)||(6514564-6514648)
[»] chr8 (1 HSPs)
chr8 (14-187)||(11225564-11225737)
[»] chr5 (2 HSPs)
chr5 (35-174)||(27367934-27368073)
chr5 (42-177)||(28826813-28826948)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 47710813 - 47710986
Alignment:
Q  14 caaaggtacagagagagataaagaataactactaagcatgagtgcaacggttgccatagttggtctttcaaccaaattttcttgaacacatagtaaagca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47710813 caaaggtacagagagagataaagaataactactaagcatgagtgcaacggttgccatagttggtctttcaaccaaattttcttgaacacatagtaaagca 47710912  T
Q  114 atgtgaatgcatctcattatttcattttgtgaaccattgcttaatgatggatctattatatttgtgattgtacc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47710913 atgtgaatgcatctcattatttcattttgtgaaccattgcttaatgatggatctattatatttgtgattgtacc 47710986  T

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Target: chr1; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 47757692 - 47757865
Alignment:
Q  14 caaaggtacagagagagataaagaataactactaagcatgagtgcaacggttgccatagttggtctttcaaccaaattttcttgaacacatagtaaagca 113  Q
    |||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47757692 caaaggtacagagagagacatagaataactactaagcatgagtacaatggttgccatggttggtctttcaaccaaattttcttgaacacatagtaaagca 47757791  T
Q  114 atgtgaatgcatctcattatttcattttgtgaaccattgcttaatgatggatctattatatttgtgattgtacc 187  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  47757792 atgtgaatgcatctcattatttcatttagtgaaccattgcttaatgatggatcaattatatttgtgattgtacc 47757865  T

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Target: chr1; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 47700527 - 47700700
Alignment:
Q  14 caaaggtacagagagagataaagaataactactaagcatgagtgcaacggttgccatagttggtctttcaaccaaattttcttgaacacatagtaaagca 113  Q
    ||||||||| |||||||| | |||||||||||||||||||||| ||| |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  47700527 caaaggtaccgagagagacatagaataactactaagcatgagtacaatggttgccatgtttggtctttcaaccaaattttcttgaacacatagtaaagca 47700626  T
Q  114 atgtgaatgcatctcattatttcattttgtgaaccattgcttaatgatggatctattatatttgtgattgtacc 187  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  47700627 atgtgaatgcatctcattatttcattttgtgaaccgttgtttaatgatggatctattatatttgtgattgtacc 47700700  T

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Target: chr1; HSP #4
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 47715524 - 47715697
Alignment:
Q  14 caaaggtacagagagagataaagaataactactaagcatgagtgcaacggttgccatagttggtctttcaaccaaattttcttgaacacatagtaaagca 113  Q
    ||||||||||| |||||  | | |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  47715524 caaaggtacagcgagagtgatataataactactaagcatgagtacaacggttgccatgattggtctttcaaccaaattttcttgaacacatagtaaagca 47715623  T
Q  114 atgtgaatgcatctcattatttcattttgtgaaccattgcttaatgatggatctattatatttgtgattgtacc 187  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47715624 atgtgaatgcatctcattatttcatttcgtgaaccattgcttaatgatggatctattatatttgtgattgtacc 47715697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 47743291 - 47743464
Alignment:
Q  14 caaaggtacagagagagataaagaataactactaagcatgagtgcaacggttgccatagttggtctttcaaccaaattttcttgaacacatagtaaagca 113  Q
    ||||||||| |||||| | | |||||||||||||||||||| | |||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  47743291 caaaggtacggagagaaagatagaataactactaagcatgactacaacggttgccatgattggtctttcaaccaaattttcttgaacacatagtaaagca 47743390  T
Q  114 atgtgaatgcatctcattatttcattttgtgaaccattgcttaatgatggatctattatatttgtgattgtacc 187  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47743391 atgtgaatgcatctcattatttcatttcgtgaaccattgcttaatgatggatctattatatttgtgattgtacc 47743464  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 35 - 176
Target Start/End: Complemental strand, 47771648 - 47771507
Alignment:
Q  35 agaataactactaagcatgagtgcaacggttgccatagttggtctttcaaccaaattttcttgaacacatagtaaagcaatgtgaatgcatctcattatt 134  Q
    |||||||||| |||||||||||||||| || ||||| |||||||| ||||| | ||||||||||||||| |||||  |||| || |||||||||||||||    
T  47771648 agaataactattaagcatgagtgcaacagtagccatggttggtctgtcaactacattttcttgaacacaaagtaagccaatatggatgcatctcattatt 47771549  T
Q  135 tcattttgtgaaccattgcttaatgatggatctattatattt 176  Q
    ||||||  ||||  |||| |||||| || |||||| ||||||    
T  47771548 tcatttgctgaaatattgtttaatgctgcatctatcatattt 47771507  T

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Target: chr1; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 35 - 175
Target Start/End: Complemental strand, 47775800 - 47775660
Alignment:
Q  35 agaataactactaagcatgagtgcaacggttgccatagttggtctttcaaccaaattttcttgaacacatagtaaagcaatgtgaatgcatctcattatt 134  Q
    |||||||||| |||||||||||||||| |  ||||| |||||||| ||||| | ||||||||||||||| ||||| ||||| || || ||||||||||||    
T  47775800 agaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatacatctcattatt 47775701  T
Q  135 tcattttgtgaaccattgcttaatgatggatctattatatt 175  Q
    ||||||  ||||  |||| |||||| ||||||||| |||||    
T  47775700 tcatttgctgaaatattgtttaatgctggatctataatatt 47775660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 178
Target Start/End: Complemental strand, 6525948 - 6525859
Alignment:
Q  89 attttcttgaacacatagtaaagcaatgtgaatgcatctcattatttcattttgtgaaccattgcttaatgatggatctattatatttgt 178  Q
    ||||||||||||||| |||||  ||||||| ||||||||||||||||| ||   |||| ||||| ||||||  |||||||| | ||||||    
T  6525948 attttcttgaacacaaagtaacccaatgtggatgcatctcattatttcgttcactgaatcattgtttaatgtgggatctataacatttgt 6525859  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 6514564 - 6514648
Alignment:
Q  93 tcttgaacacatagtaaagcaatgtgaatgcatctcattatttcattttgtgaaccattgcttaatgatggatctattatatttg 177  Q
    ||||||||||| |||||  |||| || || ||||||||||| |||||| ||||  ||||| |||||| ||||||||| |||||||    
T  6514564 tcttgaacacaaagtaatccaatatggatacatctcattatctcatttagtgagtcattgtttaatgttggatctatgatatttg 6514648  T

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Target: chr8 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 11225737 - 11225564
Alignment:
Q  14 caaaggtacagagagagataaagaataactactaagcatgagtgcaacggttgccatagttggtctttcaaccaaattttcttgaacacatagtaaagca 113  Q
    ||||||||| |||||| | | |||||||||||||||||||| | |||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  11225737 caaaggtacggagagaaagatagaataactactaagcatgactacaacggttgccatgattggtctttcaaccaaattttcttgaacacatagtaaagca 11225638  T
Q  114 atgtgaatgcatctcattatttcattttgtgaaccattgcttaatgatggatctattatatttgtgattgtacc 187  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11225637 atgtgaatgcatctcattatttcatttcgtgaaccattgcttaatgatggatctattatatttgtgattgtacc 11225564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 35 - 174
Target Start/End: Original strand, 27367934 - 27368073
Alignment:
Q  35 agaataactactaagcatgagtgcaacggttgccatagttggtctttcaaccaaattttcttgaacacatagtaaagcaatgtgaatgcatctcattatt 134  Q
    |||||||||| ||||||||| |||||| |  ||||| |||||||| |||| ||| ||||||||||  || |||||| ||||||| ||||||||||  |||    
T  27367934 agaataactattaagcatgactgcaacagaagccatggttggtctatcaatcaagttttcttgaatgcagagtaaaccaatgtggatgcatctcaagatt 27368033  T
Q  135 tcattttgtgaaccattgcttaatgatggatctattatat 174  Q
    ||||||||||||   ||  |||||||||||||||| ||||    
T  27368034 tcattttgtgaaatgttttttaatgatggatctataatat 27368073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 177
Target Start/End: Original strand, 28826813 - 28826948
Alignment:
Q  42 ctactaagcatgagtgcaacggttgccatagttggtctttcaaccaaattttcttgaacacatagtaaagcaatgtgaatgcatctcattatttcatttt 141  Q
    ||||| ||||||||||||| ||| ||||| ||||||| || | | | ||| ||||| |||||||||||  |||| |||||||||||||| |||||||||     
T  28826813 ctacttagcatgagtgcaatggtagccatggttggtcgtttagctacattgtcttggacacatagtaagccaatatgaatgcatctcatgatttcatttc 28826912  T
Q  142 gtgaaccattgcttaatgatggatctattatatttg 177  Q
     |||||  |||  |||| |||||||||| |||||||    
T  28826913 ttgaactgttgtataataatggatctataatatttg 28826948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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