View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10211_low_9 (Length: 500)
Name: NF10211_low_9
Description: NF10211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10211_low_9 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 2 - 177
Target Start/End: Original strand, 26373564 - 26373740
Alignment:
| Q |
2 |
caacacaaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacacacgttagtaaccaaacagcccttaccggtttaaagaaccaattcc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
26373564 |
caacacaaccagtttcagacgtgtctgaacccagattatgggatgagtccaacacacgttagtaaccaaacagcccttacgggtttaaagaaccataccc |
26373663 |
T |
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| Q |
102 |
tttcgggtttgcgaaacagaa-catcaaaacaggtcacaactgttaccatgccctccaatctctgatcagcaacccc |
177 |
Q |
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| T |
26373664 |
tttcgggtttgcgaaacagaaccaccaaaacaggtcacaactgttaccatgccctccaatctctgatcagcaacccc |
26373740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 268 - 481
Target Start/End: Original strand, 26373851 - 26374066
Alignment:
| Q |
268 |
cggaagagtgagctagcaccaccagcttggaaggagaagcttgaggtcgtgaaagctgcaaaagacccaatcgaaatc--ggatctaaaacatgaagcaa |
365 |
Q |
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| T |
26373851 |
cggaagagtgagctagcaccactggcttggaaggagaagcttgaggtcgtgaaagctgcaaaagacatgaattaaaacatgaagcaaaaacatgaagcaa |
26373950 |
T |
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| Q |
366 |
aaacgagcaacaaacagccgtgagcgagcgaaaccatcccctaccacgcctttagagaaaacgacggaggagggtgacggccaccagaggaaaacccaaa |
465 |
Q |
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| T |
26373951 |
aaacgagcaacaaacagccgtgaccgagggaaaccatcccctaccacgcctttagagaaaacgacggaggagggtgacggccaccggaggaaaacccaaa |
26374050 |
T |
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| Q |
466 |
aagccgacgtcgagtg |
481 |
Q |
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| T |
26374051 |
aagccgacgtcgagtg |
26374066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 28541701 - 28541750
Alignment:
| Q |
7 |
caaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacac |
56 |
Q |
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| T |
28541701 |
caaccagtttcagacgtgtttgaacccatatcgagggatgagttcaacac |
28541750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 2 - 177
Target Start/End: Complemental strand, 31043 - 30867
Alignment:
| Q |
2 |
caacacaaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacacacgttagtaaccaaacagcccttaccggtttaaagaaccaattcc |
101 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| || |
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| T |
31043 |
caacacaaccagtttcagacgtgtctgaactcagatcatgggatgagtctaacacacgttagtaaccaaacaacccttataggtttaaagaaccataccc |
30944 |
T |
|
| Q |
102 |
tttcgggtttgcgaaacagaa-catcaaaacaggtcacaactgttaccatgccctccaatctctgatcagcaacccc |
177 |
Q |
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|||||||||||||||||| || || ||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
30943 |
tttcgggtttgcgaaacaaaaccaccaaaacatgtcacaattgttaccatgtcctccaatctctgatcagcaacccc |
30867 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 44742095 - 44742001
Alignment:
| Q |
2 |
caacacaaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacacacgttagtaaccaaacagcccttaccggtttaaagaacca |
96 |
Q |
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|||||||| | ||| |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
44742095 |
caacacaaacggttccagacgcgcttgaacccagatcaagggatgagtccaacacacgttagtaaccaaacagcccttacgggttaaaagaacca |
44742001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 14635965 - 14636057
Alignment:
| Q |
2 |
caacacaaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacacacgttagtaaccaaacagcccttaccggtttaaagaaccaa |
97 |
Q |
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|||| ||||||||||||||||||| ||||||||||||| ||||||||| || |||||||||| ||| |||||||||| | |||||| |||||||| |
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| T |
14635965 |
caactcaaccagtttcagacgtgtttgaacccagatcaagggatgagttca--acacgttagttacc-aacagccctttcgggtttatagaaccaa |
14636057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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