View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10212_1 (Length: 423)
Name: NF10212_1
Description: NF10212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10212_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 210 - 394
Target Start/End: Complemental strand, 34409014 - 34408830
Alignment:
| Q |
210 |
taccatcccatcttagacatggcgtaaggaagggtgagaacgccggcgccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34409014 |
taccatcccatcttagacatggcgtaaggaagggtgagaacgccggcgccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcc |
34408915 |
T |
|
| Q |
310 |
tcgaggcagtgacgggaagccaatcatcgatggccttctgccttgctgcaatatcatctgacgacgacatgtttccaatcaatat |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
34408914 |
tcgaggcagtgacgggaagccaatcatcgatggccttctgccttgctgcaacatcatctgacgatgacatgtttccgatcaatat |
34408830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 34409201 - 34409141
Alignment:
| Q |
20 |
gacatcatcaggataactgaacccggacccctatttttcatatagtccaataaaagcaaaa |
80 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34409201 |
gacattatcaggataactgaacccggacccctatttttcatatagtccaataaaagcaaaa |
34409141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 346
Target Start/End: Original strand, 38827917 - 38828053
Alignment:
| Q |
210 |
taccatcccatcttagacatggcgtaaggaagggtgagaacgccggcgccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcc |
309 |
Q |
| |
|
||||||||||| | ||||| || || ||||| ||||||| || || ||||||||||| || | |||||| || || || |||||||||||||| || | |
|
|
| T |
38827917 |
taccatcccatatgggacattgcatatggaagactgagaacaccagcaccaaccatggctgttagattgtggaacgccgaataccaccatttggcatttc |
38828016 |
T |
|
| Q |
310 |
tcgaggcagtgacgggaagccaatcatcgatggcctt |
346 |
Q |
| |
|
| || ||||| || |||||||||||||| |||||||| |
|
|
| T |
38828017 |
tagaagcagttacaggaagccaatcatcaatggcctt |
38828053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 7980045 - 7980097
Alignment:
| Q |
258 |
ccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcct |
310 |
Q |
| |
|
||||||||||| |||| |||||||||||| |||||||||||||| || ||||| |
|
|
| T |
7980045 |
ccaaccatggcagtgacattgtgaaaagctgagtaccaccattttgcattcct |
7980097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 346
Target Start/End: Complemental strand, 43851837 - 43851749
Alignment:
| Q |
258 |
ccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcctcgaggcagtgacgggaagccaatcatcgatggcctt |
346 |
Q |
| |
|
||||||||||| || | |||||||||||| | |||||||||||| || ||||| || | ||| | ||||||||||||||| || ||||| |
|
|
| T |
43851837 |
ccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcattccttgaagaagttatgggaagccaatcatctattgcctt |
43851749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University