View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10212_3 (Length: 331)
Name: NF10212_3
Description: NF10212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10212_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 41548031 - 41548334
Alignment:
| Q |
1 |
gtctcaacacttcaagttcatggtcttcctccatcnnnnnnncgttcaacctgtcaacctcacacttcaacccaacgtttctctttcttagaaattcaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41548031 |
gtctcaacacttcaagttcatggtcttcctccatctttttttcgttcaacctgtcaacctcacacttcaacccaacgtttctctttcttagaaattcaat |
41548130 |
T |
|
| Q |
101 |
agtttccttactttcttgtttcaacttattatgagttttttcagccgtcttggcttccttcaagagagcattataactttcttgtactttcttcattttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41548131 |
agtttccttactttcttgtttcaacttattatgagttttttcagccgtcttggcttccttcaagagagcattataactttcttgtactttcttcattttc |
41548230 |
T |
|
| Q |
201 |
tgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaagttgttgtctttccatttcaacattcttatgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41548231 |
tgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaagttgttgtctttccatttcaacattcttatgta |
41548330 |
T |
|
| Q |
301 |
agtg |
304 |
Q |
| |
|
|||| |
|
|
| T |
41548331 |
agtg |
41548334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 41509652 - 41509743
Alignment:
| Q |
173 |
ataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccattt |
264 |
Q |
| |
|
||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
41509652 |
ataacgttcttgtactttcttccctttctgaaaaatttcctctcttttctttaactcttcctcagcctttatccttgcaagtttctccattt |
41509743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 41519878 - 41519969
Alignment:
| Q |
173 |
ataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccattt |
264 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||| || ||||| ||||||||||||| |
|
|
| T |
41519878 |
ataacgttcttgtactttcttccctttctgacaaagttcctctcttttcttaaactcttcctcggcctgtatccttgcaagtttctccattt |
41519969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 268
Target Start/End: Original strand, 41515637 - 41515732
Alignment:
| Q |
173 |
ataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaag |
268 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||| || ||||||||||| ||||| |||||| | ||||||||||||||||||| |||||| |
|
|
| T |
41515637 |
ataactttcttgaactttcttccctttctcacaaatctcttctcttttcttaaactcagactcagcgtacaaccttgagagtttctccagttgaag |
41515732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 41524548 - 41524655
Alignment:
| Q |
154 |
cttccttcaagagagcattataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagag |
253 |
Q |
| |
|
|||| ||||| ||||| | |||||||||||| ||||||||| ||| | |||||| || ||||||||||| ||||| |||||| | |||||||||||| |
|
|
| T |
41524548 |
cttctttcaaaagagcttcataactttcttgaactttcttccctttttcacaaatctcttctcttttcttaaactcagactcagcatataaccttgagag |
41524647 |
T |
|
| Q |
254 |
tttctcca |
261 |
Q |
| |
|
|||||||| |
|
|
| T |
41524648 |
tttctcca |
41524655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 41469895 - 41469970
Alignment:
| Q |
154 |
cttccttcaagagagcattataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactc |
229 |
Q |
| |
|
|||| ||||| ||||| | ||||||||||| ||||||||| ||||| ||||||||||||||||||||| ||||| |
|
|
| T |
41469895 |
cttctttcaaaagagcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactc |
41469970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 16638393 - 16638334
Alignment:
| Q |
209 |
ttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaag |
268 |
Q |
| |
|
||||||||||||||| ||||||| |||||| | |||||||| ||||||||||||||||| |
|
|
| T |
16638393 |
ttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaag |
16638334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 17457245 - 17457304
Alignment:
| Q |
209 |
ttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaag |
268 |
Q |
| |
|
||||||||||||||| ||||||| |||||| | |||||||| ||||||||||||||||| |
|
|
| T |
17457245 |
ttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaag |
17457304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 17595969 - 17595910
Alignment:
| Q |
209 |
ttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaag |
268 |
Q |
| |
|
||||||||||||||| ||||||| |||||| | |||||||| ||||||||||||||||| |
|
|
| T |
17595969 |
ttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaag |
17595910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University