View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10212_5 (Length: 322)

Name: NF10212_5
Description: NF10212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10212_5
NF10212_5
[»] chr2 (1 HSPs)
chr2 (1-322)||(37844170-37844491)
[»] chr8 (1 HSPs)
chr8 (18-78)||(16330969-16331029)
[»] chr1 (1 HSPs)
chr1 (22-78)||(16567286-16567342)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 37844170 - 37844491
Alignment:
Q  1 caatatacatgcaccaataccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacatatatcaaagttctgtcgatgtt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  37844170 caatatacatgcaccgataccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacatgtatcgaagttctgtcgatgtt 37844269  T
Q  101 agacatcaacacctatcgagcccttgaacacgatttcaaattgaagaatccatactagtctgctagataatgtatactgacattttaaatagcaagtgta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37844270 agacatcaacacctatcgagcccttgaacacgatttcaaattgaagaatccatactagtctgctagataatgtatactaacattttaaatagcaagtgta 37844369  T
Q  201 taccaaataatcatcggcttttgattgtactataccttggacctaattcatgtatcttacttttcatatagtcatgcatctttactttgctatcttgtct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37844370 taccaaataatcatcggcttttgattgtactataccttggacctaattcatgtatcttacttttcatatagtcatgcatcttcactttgctatcttgtct 37844469  T
Q  301 cattagcatcaaaggctataac 322  Q
    ||||||||||||||||||||||    
T  37844470 cattagcatcaaaggctataac 37844491  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 16330969 - 16331029
Alignment:
Q  18 taccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacat 78  Q
    |||||||||||| |||| || |||||||||||||| |||||||||||  ||||||||||||    
T  16330969 taccgacatgtagacactagtaataatttaagaaaatgaaaatgattaaatgtaaccacat 16331029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 16567286 - 16567342
Alignment:
Q  22 gacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacat 78  Q
    |||||||| ||||| | |||||||||||||| || ||||||||| ||||||||||||    
T  16567286 gacatgtagacacatgcaataatttaagaaaatggaaatgattgaatgtaaccacat 16567342  T

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