View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10212_low_1 (Length: 465)
Name: NF10212_low_1
Description: NF10212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10212_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Original strand, 4170350 - 4170788
Alignment:
| Q |
17 |
cgaacaccagttaacacataacagtggaacaatgaagcaacaacccggaaaattaacggtacaaagctaaagttgcgcgaaacgacttgcaacgaagccc |
116 |
Q |
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| T |
4170350 |
cgaacatcagttaacacataacagtggaacaatgaagcaacaacccggaaaattaacggtacaaagctgaagttgcgcgaaacgacttgcaatgaagccc |
4170449 |
T |
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| Q |
117 |
accgatcgaaccaattccagattctgtaatatcaacccaataatgcaaa-ccaagggatgacgaatcggagaagaacaacaaacctatgtcataaaacat |
215 |
Q |
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| T |
4170450 |
accaaacgaaccaattccagattctgtaatatcaacccaataatgcaaatccaagggatgacgaatcggagaagagcaacaaacctatgtcataaaacat |
4170549 |
T |
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| Q |
216 |
aacaaatctggatcaaacagaaccaaacattacaaatttattaagttcacattagtgttttaaggatagatctcaataagagacaataatccagtacaag |
315 |
Q |
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| T |
4170550 |
aacaaatctggatcaaacagaaccaaacattacaaatttattaagttcacattagtgttttaaggatagatctcaataagagacaataatccagtacaag |
4170649 |
T |
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| Q |
316 |
gagatattttgtaggtttcaaagcctgcttccatgaagagtttcttccattcttcctcatttctttcttttccatttagacatgaaattgttacattcat |
415 |
Q |
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| T |
4170650 |
gagatattttgtagttttcaaagcctgcttccatgaagagtttcttccattcttcctcatttctctcttttccatttagacatgaaattgttacattcat |
4170749 |
T |
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| Q |
416 |
taggagctttatttgagtaagttcgttctcttctttctt |
454 |
Q |
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| T |
4170750 |
taggagctttatttgagtaagttcgttctcttctttctt |
4170788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 265 - 454
Target Start/End: Complemental strand, 4161229 - 4161040
Alignment:
| Q |
265 |
cattagtgttttaaggatagatctcaataagagacaataatccagtacaaggagatattttgtaggtttcaaagcctgcttccatgaagagtttcttcca |
364 |
Q |
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| T |
4161229 |
cattagtattttaaggatagatctctataagagacattaatccagtaaaaggagatattttgtaatcttggaagcctgcttctataaagagctttttcca |
4161130 |
T |
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| Q |
365 |
ttcttcctcatttctttcttttccatttagacatgaaattgttacattcattaggagctttatttgagtaagttcgttctcttctttctt |
454 |
Q |
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| T |
4161129 |
ttcttcctcatttctctcttttccattaacacatgaaattgtaacattcatgagtagctttatttgagtaagttggttctcatctttctt |
4161040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 274 - 454
Target Start/End: Original strand, 4176443 - 4176623
Alignment:
| Q |
274 |
tttaaggatagatctcaataagagacaataatccagtacaaggagatattttgtaggtttcaaagcctgcttccatgaagagtttcttccattcttcctc |
373 |
Q |
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| T |
4176443 |
tttatggatagatctcaataagagacaaaaatccagtcaaaggagatatcttatagtcttggaaaccagcttctatgaagagtttcttccattcttcctc |
4176542 |
T |
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| Q |
374 |
atttctttcttttccatttagacatgaaattgttacattcattaggagctttatttgagtaagttcgttctcttctttctt |
454 |
Q |
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| T |
4176543 |
atttctctcttttccattaagacaagccatgtttacatccataaggagcttaatttgagtaacttgattctcatctttctt |
4176623 |
T |
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