View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10212_low_2 (Length: 438)
Name: NF10212_low_2
Description: NF10212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10212_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 39361040 - 39360616
Alignment:
| Q |
1 |
gcatgaaaaacagttattgttaccatcaatcaaagctccataaatctccaaccacatgttcctgaacattattaggtggcatcactgattgtccatcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39361040 |
gcatgaaaaacagttattgttaccatcaatcaaagctccataaatctccaaccacatgttcctgaacattattaggtggcatcactgattgtccatcata |
39360941 |
T |
|
| Q |
101 |
gtaaatctgataaaacttcatgtaatcctcgtatgccaacaattcatcagacaattcttgtacctcattttttgctaattcagcttcagcttgttcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39360940 |
gtaaatctgataaaacttcatgtaatcctcgtatgccaacaattcatcagacaattcttgtacctcattttttgctaattcagcttcagcttgttcaaca |
39360841 |
T |
|
| Q |
201 |
acatgtgtttcttgttctaccactttctctttctctttttcatgttcattcacaacaccaccaaaataaccgaattcattctcattggaaccaccattga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39360840 |
acatgtgtttcttgttctaccactttctctttctctttttcatgttcattcacaacaccaccaaaataaccgaattcattctgattggaaccaccattga |
39360741 |
T |
|
| Q |
301 |
actccatcacagaaaaaccaacttctgaaactgaaccagacccaaataaagaattctcatcaccaccagaaccagtattgatagcatgaattgtgtcagt |
400 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39360740 |
actccatcacagaaaaaccaacctctgaaactgaaccagacccaaataaagaattctcatcaccaccagaaccagtattgatagcatgaattgtgtcagt |
39360641 |
T |
|
| Q |
401 |
ttggttcagatcataaccaaattcc |
425 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
39360640 |
ttggttcagatcataaccaaattcc |
39360616 |
T |
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