View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10213_high_20 (Length: 236)

Name: NF10213_high_20
Description: NF10213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10213_high_20
NF10213_high_20
[»] chr5 (2 HSPs)
chr5 (77-171)||(24428576-24428670)
chr5 (1-47)||(24428467-24428513)
[»] scaffold0790 (2 HSPs)
scaffold0790 (118-173)||(620-675)
scaffold0790 (1-30)||(457-486)
[»] chr1 (1 HSPs)
chr1 (143-174)||(36938052-36938083)
[»] chr6 (1 HSPs)
chr6 (142-174)||(29017958-29017990)
[»] chr4 (1 HSPs)
chr4 (143-171)||(46899888-46899916)
[»] chr3 (1 HSPs)
chr3 (143-179)||(44589419-44589455)


Alignment Details
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 77 - 171
Target Start/End: Original strand, 24428576 - 24428670
Alignment:
Q  77 aatttgattattcttgaacggactatgccatagggagattgatttttacgattttggggattttttagtgttgtcaattgtggatcacagaaaat 171  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24428576 aatttgattattcttgaacggactatgctatagggagattgatttttacgattttggggaatttttagtgttgtcaattgtggatcacagaaaat 24428670  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24428467 - 24428513
Alignment:
Q  1 gcgctattatcaccaatggtaatttctttctcaatcatcatcaccaa 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24428467 gcgctattatcaccaatggtaatttctttctcaatcatcatcaccaa 24428513  T

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Target: scaffold0790 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 620 - 675
Alignment:
Q  118 atttttacgattttggggattttttagtgttgtcaattgtggatcacagaaaatag 173  Q
    |||||||||| ||| |||||||||||||||||||||| || |||||||||||||||    
T  620 atttttacgaattttgggattttttagtgttgtcaatcgtcgatcacagaaaatag 675  T

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Target: scaffold0790; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 457 - 486
Alignment:
Q  1 gcgctattatcaccaatggtaatttctttc 30  Q
    ||||||||||||||||||||||||||||||    
T  457 gcgctattatcaccaatggtaatttctttc 486  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 174
Target Start/End: Complemental strand, 36938083 - 36938052
Alignment:
Q  143 agtgttgtcaattgtggatcacagaaaatagc 174  Q
    ||||||||||||||||||||||||||||||||    
T  36938083 agtgttgtcaattgtggatcacagaaaatagc 36938052  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 29017958 - 29017990
Alignment:
Q  142 tagtgttgtcaattgtggatcacagaaaatagc 174  Q
    ||||||||||||||||||||| |||||||||||    
T  29017958 tagtgttgtcaattgtggatcgcagaaaatagc 29017990  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 46899888 - 46899916
Alignment:
Q  143 agtgttgtcaattgtggatcacagaaaat 171  Q
    |||||||||||||||||||||||||||||    
T  46899888 agtgttgtcaattgtggatcacagaaaat 46899916  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 44589419 - 44589455
Alignment:
Q  143 agtgttgtcaattgtggatcacagaaaatagcttatt 179  Q
    |||||||||||||||||||||  ||||||||||||||    
T  44589419 agtgttgtcaattgtggatcatggaaaatagcttatt 44589455  T

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