View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10213_high_7 (Length: 368)
Name: NF10213_high_7
Description: NF10213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10213_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 353
Target Start/End: Original strand, 4555203 - 4555533
Alignment:
| Q |
14 |
ggacatcacagtaagcactagtaataaaactaagagtgccatgatgaaggaaagggatgaaaagtcatatgtgaaattaacttcccaacaagtatggcag |
113 |
Q |
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| T |
4555203 |
ggacaccacagtaagcactagtaataaaactaagagtgccatgatgaaggaaagggatgaaaagtcatatgtgaaattaacttcccaacaagtatggcag |
4555302 |
T |
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| Q |
114 |
aaaagtggaagttgtccaaaaggaacaatacctgttcgaagaatacgaaagagagagcttctcaaggctccatccattgatgaatttggaagaaagaaac |
213 |
Q |
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| T |
4555303 |
aaaagtggaagttgtccaaagggaacaatacctgttcgaagaatacgaaagagagagcttctcaaggctccatccattgatgaatttggaagaaagaaac |
4555402 |
T |
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| Q |
214 |
caagcttcagaaaagttaatcagcttaatcagaacgttgattcctttgtactgctaacaaatcactctgtaagtttctatgcatgctacagctacaaaat |
313 |
Q |
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| T |
4555403 |
caagcttcagaaaag---------ttaatcagaatgttgattcctttgtactgctaacaaatcactctgtaagtttctatgcatgctacagctaaaaaat |
4555493 |
T |
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| Q |
314 |
gttggatcatgatttgacattatttctcaaacacaatttt |
353 |
Q |
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| T |
4555494 |
gttggatcatgatttgacattatttctcaaacacaatttt |
4555533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 47947941 - 47947884
Alignment:
| Q |
107 |
atggcagaaaagtggaagttgtccaaaaggaacaatacctgttcgaagaatacgaaag |
164 |
Q |
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| T |
47947941 |
atggcagaaaagtggaagttgtccaaaagaaactgtacctattcgtagaattcgaaag |
47947884 |
T |
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