View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10213_low_13 (Length: 284)
Name: NF10213_low_13
Description: NF10213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10213_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 3723653 - 3723908
Alignment:
| Q |
11 |
cacagagaattgtgaatttaatcaaccaataggagttcatcatcgaccttgccaataattatttaaagatcatttaaatnnnnnnntagatatataaatc |
110 |
Q |
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| T |
3723653 |
cacaaagaattgtgaatttaatcaaccaataggagttcatcatcgaccttgccaataattatttaaagatcatttaaataaaaaattagatatataaacc |
3723752 |
T |
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| Q |
111 |
aacttcacatcagaatgagagaatatcaactatcaattatcagtttaaaataatttgatgataaggtcacaaacaaagttttgatgagcaaatcacatgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3723753 |
aacttcacatcagaatgagagaatatcaactatcaattatcagtttgaaataatttgatgataaggtcacaaacaaagttttgatgagcaaatcacatgt |
3723852 |
T |
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| Q |
211 |
gaacttaactgcaacaaaataatcataaatatgtaattatgctaaaaaagacagtg |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3723853 |
gaacttaactgcaacaaaataatcataaatatgtaattatgctaaaaaagacagtg |
3723908 |
T |
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