View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10213_low_16 (Length: 259)
Name: NF10213_low_16
Description: NF10213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10213_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 31630276 - 31630525
Alignment:
| Q |
1 |
attaacgacgtgttttctgctgtcttttgatgctgagctagtatgttatttttcatcatatacttaaacaaccattacttgagccgtgtttcacattatg |
100 |
Q |
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| T |
31630276 |
attaaccaagtgttttctgttgtcttttgatgctgaggtagtatgttatttttcatcatatacttaaacaaccattacttgagccgtgtttcacattatg |
31630375 |
T |
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| Q |
101 |
cagagaacggcgaaagctttaatgttctccgttatgaagttggacaaaagtatgatcctcatttagactactttgcggatgattataatactgtgaatgg |
200 |
Q |
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| T |
31630376 |
cagagaacggcgaaagctttaatgttctccgttatgaagttggacaaaagtatgatcctcatttagactactttgcggatgattataatactgtgaatgg |
31630475 |
T |
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| Q |
201 |
aggtcagcgtatagcaacaatgctgatgtacctgtaagtgacttcatctc |
250 |
Q |
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| T |
31630476 |
aggtcagcgtatagcaacaatgctgatgtacctgtaagtgacttcatctc |
31630525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 31656624 - 31656865
Alignment:
| Q |
4 |
aacgacgtgttttctgctgtcttttgatgctgagctagtatgttatttttcatcatatacttaaa-caaccattacttgagccgtgtttcacattatgca |
102 |
Q |
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| T |
31656624 |
aacgaagtgttttcagttgtcttttgatgctgagatagtatgttatttttcacccaatacttaaaacaaccattacttgagccgtgtttcacaatatgca |
31656723 |
T |
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| Q |
103 |
gagaacggcgaaagctttaatgttctccgttatgaagttggacaaaagtatgatcctcatttagactactttgcggatgattataatactgtgaatggag |
202 |
Q |
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| T |
31656724 |
gagcatggcgaaagctttaatgttctccattatgaagttggacaaaagtatgaacctcattatgactactttttggatacgtttagtactaggcatgcag |
31656823 |
T |
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| Q |
203 |
gtcagcgtatagcaacaatgctgatgtacctgtaagtgactt |
244 |
Q |
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| T |
31656824 |
gtcagcgcatagcaacaatgctgatgtacctgtaagtgactt |
31656865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 62 - 242
Target Start/End: Original strand, 31651880 - 31652060
Alignment:
| Q |
62 |
acttaaacaaccattacttgagccgtgtttcacattatgcagagaacggcgaaagctttaatgttctccgttatgaagttggacaaaagtatgatcctca |
161 |
Q |
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| T |
31651880 |
acttaaacaaccattacttgaactgtgtttcacaatatgcagagcatggtgaaaactttaatgttctccattatgaagttggacaaaagtatgaacctca |
31651979 |
T |
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| Q |
162 |
tttagactactttgcggatgattataatactgtgaatggaggtcagcgtatagcaacaatgctgatgtacctgtaagtgac |
242 |
Q |
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| T |
31651980 |
ttatgactactttatggatacttttagtactacatatgcgggtcagcgtatagcaacaatgctgatgtacctgtaagtgac |
31652060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 31646329 - 31646525
Alignment:
| Q |
43 |
atgttatttttcatcatatacttaaacaaccattacttgagccgtgtttcacattatgcagagaacggcgaaagctttaatgttctccgttatgaagttg |
142 |
Q |
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| T |
31646329 |
atgttatatttcatcatatatttaaacaaccattaatttggctatgtttcacaatatgcagagaatggcgaaagcgttaatattctccattatgaagttg |
31646428 |
T |
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| Q |
143 |
gacaaaagtatgatcctcatttagactactttgcggatgattataatactgtgaatggaggtcagcgtatagcaacaatgctgatgtacctgtaagt |
239 |
Q |
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| T |
31646429 |
gacaaaagtacgaacctcatcctgatttctttacagatgagattaatactaagaacgggggtgagcgtgtagcaacaatgttgatgtacctataagt |
31646525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 239
Target Start/End: Original strand, 31637658 - 31637839
Alignment:
| Q |
57 |
catatacttaaacaaccattacttgagccgtgtttcacattatgcagagaacggcgaaagctttaatgttctccgttatgaagttggacaaaagtatgat |
156 |
Q |
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| T |
31637658 |
catatacttaaacaactattatttaagtt-tgtttcaaaacatgcagagcatggcgaagacgttaatattctccattatgaagttggacaaaagtacgat |
31637756 |
T |
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| Q |
157 |
cctcatttagactactttgcggatgattataatactgtgaatggaggtcagcgtatagcaacaatgctgatgtacctgtaagt |
239 |
Q |
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| T |
31637757 |
tttcatactgactactttgaagatgaggttaatactaagcatgggggtgagcgtatagcaacaatgttgatgtacctgtaagt |
31637839 |
T |
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