View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10213_low_18 (Length: 258)

Name: NF10213_low_18
Description: NF10213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10213_low_18
NF10213_low_18
[»] chr3 (5 HSPs)
chr3 (1-247)||(11897148-11897394)
chr3 (1-248)||(26432599-26432846)
chr3 (91-248)||(23424497-23424654)
chr3 (133-248)||(53608336-53608451)
chr3 (94-248)||(38647179-38647333)
[»] chr8 (4 HSPs)
chr8 (1-247)||(23132486-23132732)
chr8 (91-194)||(26587277-26587380)
chr8 (157-248)||(38348466-38348557)
chr8 (73-153)||(14760016-14760096)
[»] chr2 (11 HSPs)
chr2 (1-247)||(14653581-14653827)
chr2 (94-243)||(26791322-26791471)
chr2 (97-248)||(40328174-40328325)
chr2 (97-248)||(35135219-35135370)
chr2 (82-191)||(16322502-16322611)
chr2 (94-191)||(573245-573342)
chr2 (97-248)||(3779048-3779199)
chr2 (94-239)||(177504-177649)
chr2 (94-145)||(35062956-35063007)
chr2 (109-191)||(19265469-19265551)
chr2 (89-175)||(42403209-42403295)
[»] chr1 (4 HSPs)
chr1 (1-247)||(20284849-20285095)
chr1 (82-249)||(50236550-50236717)
chr1 (94-249)||(50451893-50452048)
chr1 (133-191)||(23465403-23465461)
[»] chr4 (6 HSPs)
chr4 (97-248)||(54477407-54477558)
chr4 (91-201)||(14307826-14307936)
chr4 (91-201)||(14291777-14291887)
chr4 (94-191)||(3881771-3881868)
chr4 (91-243)||(46784469-46784621)
chr4 (157-248)||(33803974-33804065)
[»] scaffold0036 (1 HSPs)
scaffold0036 (94-184)||(75967-76057)
[»] chr5 (2 HSPs)
chr5 (94-200)||(32874457-32874563)
chr5 (94-248)||(7817131-7817285)
[»] chr6 (4 HSPs)
chr6 (91-248)||(24893833-24893990)
chr6 (91-175)||(24990660-24990744)
chr6 (85-191)||(13599639-13599745)
chr6 (134-191)||(35233542-35233599)
[»] chr7 (3 HSPs)
chr7 (88-191)||(16769956-16770059)
chr7 (97-230)||(1353794-1353927)
chr7 (94-239)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 11897394 - 11897148
Alignment:
Q  1 gcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagctttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  11897394 gcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagctgaaagctttt 11897295  T
Q  101 ccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtataga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  11897294 ccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtataga 11897195  T
Q  201 gtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 247  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  11897194 gtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 11897148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 26432599 - 26432846
Alignment:
Q  1 gcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagctttt 100  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||| ||| || ||||| |||||||| || |||||||    
T  26432599 gcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagcggatagctttt 26432698  T
Q  101 ccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtataga 200  Q
    ||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||    
T  26432699 ccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattccaaagtataga 26432798  T
Q  201 gtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 248  Q
    |||  | |  ||||  || |||||||||||||| ||||||||||||||    
T  26432799 gtagtttgatgaagagacacaatgcatgatgagtttgatggtgatgtc 26432846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 248
Target Start/End: Complemental strand, 23424654 - 23424497
Alignment:
Q  91 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 190  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| || ||||    
T  23424654 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttacctttcc 23424555  T
Q  191 aaagtatagagtaactcggagaagct-acgcaatgcatgatgagcttgatggtgatgtc 248  Q
    | | ||| ||| ||   |||| || | || ||||| |||||||||||||||||||||||    
T  23424554 ataatattgag-aatgtggaggaggtgacacaatgtatgatgagcttgatggtgatgtc 23424497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 53608336 - 53608451
Alignment:
Q  133 ggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatga 232  Q
    |||||||| |||| ||| ||||| |||||| ||||||  ||||  ||||| ||||||||||| |||||| |  | |  || |  || |||||||||||||    
T  53608336 ggatcaccctgtctgagaccatgtgaaggcctgaaagaaggcattttgtttccattccaaagaatagagaaggtagaggaggaaacacaatgcatgatga 53608435  T
Q  233 gcttgatggtgatgtc 248  Q
    ||||||||||||||||    
T  53608436 gcttgatggtgatgtc 53608451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 248
Target Start/End: Original strand, 38647179 - 38647333
Alignment:
Q  94 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 193  Q
    |||||||||||||| |  ||||| || || || || | |||||||||||||| ||| || || |||||||| ||||| ||||  || || || |||||||    
T  38647179 agcttttccatgcataaaatgaagaggtagggagagagcggatcaccttgtctgagaccgtgggaaggcttaaaagggggcattttattaccgttccaaa 38647278  T
Q  194 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 248  Q
    | |||||| |  | |  || |  || |||||||||||||||||||||||||||||    
T  38647279 gaatagagaaggtggatgatgaaacacaatgcatgatgagcttgatggtgatgtc 38647333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 23132486 - 23132732
Alignment:
Q  1 gcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagctttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23132486 gcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagctttt 23132585  T
Q  101 ccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtataga 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  23132586 ccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtataga 23132685  T
Q  201 gtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 247  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  23132686 gtaactaggagaagctacgcaatgcatgatgaacttgatggtgatgt 23132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 26587380 - 26587277
Alignment:
Q  91 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 190  Q
    ||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||| | ||||||||| || ||||| ||||| ||||| |    
T  26587380 gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc 26587281  T
Q  191 aaag 194  Q
    ||||    
T  26587280 aaag 26587277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 38348557 - 38348466
Alignment:
Q  157 gaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 248  Q
    |||||||||||||| | |||  |||| ||||||||||| |||||| |  | || || |  || |||||||||||||||||||||||||||||    
T  38348557 gaaggcttgaaaggagacaatctgttgccattccaaaggatagagaaggtgggtgaggtaacacaatgcatgatgagcttgatggtgatgtc 38348466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 14760096 - 14760016
Alignment:
Q  73 gctgagtttatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggcca 153  Q
    ||||| |||||||||   || ||||||||||| ||||| ||||| || || |||||||||||||| ||||| || ||||||    
T  14760096 gctgaatttatagcaatagagagcttttccatacaaagaatgaagaggtatggggacaacggatctccttggcgaaggcca 14760016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 14653581 - 14653827
Alignment:
Q  1 gcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagctttt 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||    
T  14653581 gcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagcggatagctttt 14653680  T
Q  101 ccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtataga 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14653681 ccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtataga 14653780  T
Q  201 gtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14653781 gtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 14653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 243
Target Start/End: Complemental strand, 26791471 - 26791322
Alignment:
Q  94 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 193  Q
    ||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||| | ||||| |||||| |||||| | || ||||||||||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  194 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtg 243  Q
    | |||||| | || |  ||||  |||||||||||||||||||||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatggtg 26791322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 248
Target Start/End: Complemental strand, 40328325 - 40328174
Alignment:
Q  97 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 196  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||| | |||||||||||| |  | |||||| |||||||| |  |    
T  40328325 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattccataaaa 40328226  T
Q  197 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 248  Q
    | ||||| ||||| || |  || |||||||||||||| |||||||| |||||    
T  40328225 ttgagtagctcggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 40328174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 248
Target Start/End: Original strand, 35135219 - 35135370
Alignment:
Q  97 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 196  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||| | |||||||||||| |  | |||||| |||||||| |  |    
T  35135219 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaaa 35135318  T
Q  197 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 248  Q
    | ||||| || || || |  || |||||||||||||| |||||||| |||||    
T  35135319 ttgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 35135370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 16322611 - 16322502
Alignment:
Q  82 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgt 181  Q
    |||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| |||||||| |  ||||||||||| |||| |||||    
T  16322611 atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt 16322512  T
Q  182 tcccattcca 191  Q
    | ||||||||    
T  16322511 ttccattcca 16322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 573342 - 573245
Alignment:
Q  94 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 191  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || |||||  |||  ||||| ||||||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaaggatgcattttgttaccattcca 573245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 248
Target Start/End: Original strand, 3779048 - 3779199
Alignment:
Q  97 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 196  Q
    |||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||| | |||||||||||| |  | |||||| |||||||| |  |    
T  3779048 ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaca 3779147  T
Q  197 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 248  Q
      ||||| || || || |  || |||||||||||||| |||||||| |||||    
T  3779148 atgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 3779199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
Q  94 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 193  Q
    |||||||||||||| | |||||| || ||||| ||||| || ||||||||||  || ||||| | |||||||| ||| ||| | ||||| ||||||||||    
T  177649 agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa 177550  T
Q  194 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgat 239  Q
    | | |||| |  | | |||||  || |||||||||||||| |||||    
T  177549 gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat 177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
Q  94 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc 145  Q
    ||||||||||| ||||||||||||||||| ||||| |  |||||||||||||    
T  35062956 agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc 35063007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 19265551 - 19265469
Alignment:
Q  109 aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 191  Q
    ||||||||||||||||| |||| ||| |||||||| || || ||||| | |||||||||||| |  | |||||| ||||||||    
T  19265551 aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattcca 19265469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
Q  89 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 175  Q
    ||||||||||||||||||| || || || |||||||| || |  || |||||||| ||||||||||| |  ||||||||||| ||||    
T  42403209 ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca 42403295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 20285095 - 20284849
Alignment:
Q  1 gcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagctttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20285095 gcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagctttt 20284996  T
Q  101 ccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtataga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||   ||||| ||||||||||||||    
T  20284995 ccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttccaaagtataga 20284896  T
Q  201 gtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 247  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  20284895 gtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 20284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 249
Target Start/End: Original strand, 50236550 - 50236717
Alignment:
Q  82 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgt 181  Q
    |||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||| | |||||||||||| |||| |||||    
T  50236550 atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt 50236649  T
Q  182 tcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtcc 249  Q
    |||| ||||| |  ||||||||  | || || |  || |||||||||||||| ||| |||||||||||    
T  50236650 tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtgatgtcc 50236717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 249
Target Start/End: Complemental strand, 50452048 - 50451893
Alignment:
Q  94 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 193  Q
    ||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| ||||||  ||||| |||||||| |    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccata 50451949  T
Q  194 gtatagagtaactcggagaagct-acgcaatgcatgatgagcttgatggtgatgtcc 249  Q
      |||||| || | |||| || | || ||||||||||| || |||||||||||||||    
T  50451948 agatagagaaagt-ggaggaggtgacacaatgcatgataagtttgatggtgatgtcc 50451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 23465461 - 23465403
Alignment:
Q  133 ggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 191  Q
    |||||||||||||| || ||||| | |||||||||| ||||||| ||||| ||||||||    
T  23465461 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattcca 23465403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 248
Target Start/End: Original strand, 54477407 - 54477558
Alignment:
Q  97 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 196  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| | |||||||||||  || | |||||| ||||||||||| |    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga 54477506  T
Q  197 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 248  Q
    || ||||  | |  || |  || |||||||||||||||||||||||||||||    
T  54477507 taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgtc 54477558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 14307936 - 14307826
Alignment:
Q  91 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 190  Q
    ||||| |||||||| |||| ||||||||| ||||| ||    ||||| ||||||| ||||||||| |||||||| |||||  ||| ||||||||||||||    
T  14307936 gaaagtttttccatacaaatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcc 14307837  T
Q  191 aaagtatagag 201  Q
    |||| ||||||    
T  14307836 aaagaatagag 14307826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 14291887 - 14291777
Alignment:
Q  91 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 190  Q
    ||||| |||||||| || | ||||||||| ||||| ||    ||||| ||||||| ||||||||| |||||||| |||||  ||| ||||||||||||||    
T  14291887 gaaagtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcc 14291788  T
Q  191 aaagtatagag 201  Q
    |||| ||||||    
T  14291787 aaagaatagag 14291777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 3881868 - 3881771
Alignment:
Q  94 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 191  Q
    ||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| | ||| |||||| ||||||  ||||| ||||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattcca 3881771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 243
Target Start/End: Original strand, 46784469 - 46784621
Alignment:
Q  91 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 190  Q
    ||||| |||| ||||||||||||||| || || || || |  |||||||||||||  |||||||| | ||| |||||||||||||| || || |||||||    
T  46784469 gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc 46784568  T
Q  191 aaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtg 243  Q
    |||| |  ||| || | |  || |  || ||||||||||||||||||||||||    
T  46784569 aaaggacggagaaagttgatgacgtaacacaatgcatgatgagcttgatggtg 46784621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 33804065 - 33803974
Alignment:
Q  157 gaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 248  Q
    |||||||||||||| ||||  ||||| |||||||| |||||||||||  | |  || |  || |||||||||||||||||||||||||||||    
T  33804065 gaaggcttgaaaggaggcattttgtttccattccacagtatagagtatgtagatgaggaaacacaatgcatgatgagcttgatggtgatgtc 33803974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 76057 - 75967
Alignment:
Q  94 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcc 184  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||| | ||||||||| |  |||| ||||||||    
T  76057 agcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagcttgttcc 75967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
Q  94 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 193  Q
    |||||||||||||||| |||||| | ||| || || | ||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa 32874556  T
Q  194 gtataga 200  Q
    | |||||    
T  32874557 ggataga 32874563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 7817285 - 7817131
Alignment:
Q  94 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 193  Q
    ||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||| | |||||||||||  || |  |||||||||||||| |    
T  7817285 agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata 7817186  T
Q  194 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 248  Q
      ||||||||  | |  || | ||| |||||||||||||||||||| ||||||||    
T  7817185 aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtgatgtc 7817131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 248
Target Start/End: Original strand, 24893833 - 24893990
Alignment:
Q  91 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 190  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| |||||||    
T  24893833 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc 24893932  T
Q  191 aaagtatagagtaactcggagaagct-acgcaatgcatgatgagcttgatggtgatgtc 248  Q
    | | ||| ||| ||   |||| || | || |||||||||||||||||||||||||||||    
T  24893933 ataatatggag-aatgtggaggaggtgacacaatgcatgatgagcttgatggtgatgtc 24893990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 24990660 - 24990744
Alignment:
Q  91 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 175  Q
    |||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||    
T  24990660 gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggca 24990744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 191
Target Start/End: Complemental strand, 13599745 - 13599639
Alignment:
Q  85 gcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcc 184  Q
    ||||||||||| |||||||| || | |||||| |||||||| || |  ||||||||||| |||||  |||| | |||||||||  |||| |||||||| |    
T  13599745 gcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaacttgttac 13599646  T
Q  185 cattcca 191  Q
    |||||||    
T  13599645 cattcca 13599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 35233599 - 35233542
Alignment:
Q  134 gatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 191  Q
    |||||||||||||||| ||||| | ||||||||||   ||||||||||| ||||||||    
T  35233599 gatcaccttgtcggagaccatgtgtaggcttgaaattaggcaacttgtttccattcca 35233542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 16769956 - 16770059
Alignment:
Q  88 gctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccat 187  Q
    ||||| || |||||||| || | |||||| |||||||| || |  |||||||||||||| || ||||| | ||| |||||| ||||||| ||||| ||||    
T  16769956 gctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccat 16770055  T
Q  188 tcca 191  Q
    ||||    
T  16770056 tcca 16770059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 1353794 - 1353927
Alignment:
Q  97 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 196  Q
    |||||||| ||||| ||||||||||| || || |  ||||||||||||  ||||||||| | ||||||||| || | || ||| ||||||||| | || |    
T  1353794 ttttccatacaaagaatgaaaagatatggtgagagtggatcaccttgtatgaggccatgagtaggcttgaagggagacatctttttcccattcgagagga 1353893  T
Q  197 tagagtaactcggagaagctacgcaatgcatgat 230  Q
    ||||| || | |  || || ||||||||||||||    
T  1353894 tagagaaagtggaggaggcaacgcaatgcatgat 1353927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 1579159 - 1579304
Alignment:
Q  94 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 193  Q
    ||||||||||||||||| || || || |||||||| | ||||||||| |||| ||| ||||| | ||| |  || || ||||||||||| | |||| | |    
T  1579159 agcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttctattctaga 1579258  T
Q  194 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgat 239  Q
    | |||||| || | | |||||  || |||||||||||||| |||||    
T  1579259 gaatagagaaagttgaagaagaaacacaatgcatgatgagattgat 1579304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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