View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10213_low_22 (Length: 243)
Name: NF10213_low_22
Description: NF10213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10213_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 51144023 - 51143805
Alignment:
| Q |
16 |
aagatcagtgagtaaattacctcagagacttcatcaacaacttttgagtttgtggaatctccaaatgcattgatcatagttccaaatattaaaatcatca |
115 |
Q |
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| T |
51144023 |
aagatcagtgagtaaattacctcagagacttcatcaacaacttttgagtttgtggaatctccaaatgcattgatcatagttccaaatattaaaatcatca |
51143924 |
T |
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| Q |
116 |
agggtatagagagtccattcccaatagcacccaaagtccccataagcatcaataaacgatccgaaggatcagcaaatgagaaaagcttgtataagggtac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51143923 |
agggtatagagagtccattcccaatagcacccaaagtccccataagcatcaataaacgatccgaaggatcagcaaatgagaaaagcttgtataagggtac |
51143824 |
T |
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| Q |
216 |
tgtattggtggtttcatct |
234 |
Q |
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||| ||||||||| ||||| |
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| T |
51143823 |
tgttttggtggttacatct |
51143805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 51155166 - 51154949
Alignment:
| Q |
17 |
agatcagtgagtaaattacctcagagacttcatcaacaacttttgagtttgtggaatctccaaatgcattgatcatagttccaaatattaaaatcatcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51155166 |
agatcagtgagtaaattacctcagagacttcatcaacaacttttgagtttgtggaatctccaaatgcattgatcatagttccaaatattaaaatcatcaa |
51155067 |
T |
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| Q |
117 |
gggtatagagagtccattcccaatagcacccaaagtccccataagcatcaataaacgatccgaaggatcagcaaatgagaaaagcttgtataagggtact |
216 |
Q |
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| T |
51155066 |
gggtatagagagtccattcccaatagcacctacagtccccataagcatcaataaacgatccgaaggatcagcaaatgagaaaagcttgtataagggtact |
51154967 |
T |
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| Q |
217 |
gtattggtggtttcatct |
234 |
Q |
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|||||||||||||||||| |
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| T |
51154966 |
gtattggtggtttcatct |
51154949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 29 - 234
Target Start/End: Original strand, 29939048 - 29939253
Alignment:
| Q |
29 |
aaattacctcagagacttcatcaacaacttttgagtttgtggaatctccaaatgcattgatcatagttccaaatattaaaatcatcaagggtatagagag |
128 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
29939048 |
aaattaccttggagacttcatcaacaacttttgacgttgtggattctccgaatgcattgatcatagttccaaatattaaaaccatcaagggtaaagagat |
29939147 |
T |
|
| Q |
129 |
tccattcccaatagcacccaaagtccccataagcatcaataaacgatccgaaggatcagcaaatgagaaaagcttgtataagggtactgtattggtggtt |
228 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||| || |
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| T |
29939148 |
tccattcccaatagcacctacagtccccataagcatcaataaacaatccaaaggatcagcaaatgagaaaagcttgtataaggatactgtgttggtgatt |
29939247 |
T |
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| Q |
229 |
tcatct |
234 |
Q |
| |
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|||||| |
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| T |
29939248 |
tcatct |
29939253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 76 - 234
Target Start/End: Complemental strand, 51197363 - 51197205
Alignment:
| Q |
76 |
ccaaatgcattgatcatagttccaaatattaaaatcatcaagggtatagagagtccattcccaatagcacccaaagtccccataagcatcaataaacgat |
175 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||| || |||| |||||||||||||||||| | |||||| | || |||||||||| ||| |
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| T |
51197363 |
ccaaatgcattgatcatatttccaaatattaaagtcatcaagggcattgagattccattcccaatagcaccaacagtcccaacaaacatcaataaatgat |
51197264 |
T |
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| Q |
176 |
ccgaaggatcagcaaatgagaaaagcttgtataagggtactgtattggtggtttcatct |
234 |
Q |
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|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51197263 |
ccaaagaatcagcaaatgagaaaagcttgtataagggtactgtattggtggtttcatct |
51197205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 49739093 - 49739190
Alignment:
| Q |
121 |
atagagagtccattcccaatagcacccaaagtccccataagcatcaataaacgatccgaaggatcagcaaatgagaaaagcttgtataagggtactgt |
218 |
Q |
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||||||| ||||||||||| |||||| | |||||| | || |||||||||| |||| ||| || |||||||||||||||||||| ||||||||||| |
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| T |
49739093 |
atagagactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaagggtactgt |
49739190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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