View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10213_low_23 (Length: 243)
Name: NF10213_low_23
Description: NF10213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10213_low_23 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 35043006 - 35043246
Alignment:
| Q |
3 |
atcaaccttggaatgtacatatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatcta |
102 |
Q |
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| T |
35043006 |
atcaaccttggaatgtacatatcacaaaattatcaaagtaatgaagaggtttcggatgtatatcgcttgattgggaagtggctggcagagaccagatcta |
35043105 |
T |
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| Q |
103 |
gcaagttattggacagagttaattctgtttaatgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttctaatgtttttat |
202 |
Q |
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| T |
35043106 |
gcaagttattggacaaactgaattctgtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttctcctgtttttat |
35043205 |
T |
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| Q |
203 |
cttaacttgcagctcaagaacaattttggagaagtatttga |
243 |
Q |
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| T |
35043206 |
cttaacttgcagctcaagaacaattttggagaagtatttga |
35043246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 51855475 - 51855235
Alignment:
| Q |
3 |
atcaaccttggaatgtacatatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatcta |
102 |
Q |
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| T |
51855475 |
atcaaccttggaatgtacatatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagatcagatcta |
51855376 |
T |
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| Q |
103 |
gcaagttattggacagagttaattctgtttaatgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttctaatgtttttat |
202 |
Q |
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| T |
51855375 |
gcaagttattggacaaacttaattctgtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttcttttgtttttat |
51855276 |
T |
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| Q |
203 |
cttaacttgcagctcaagaacaattttggagaagtatttga |
243 |
Q |
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| T |
51855275 |
cttaacttgcagctcaagaacaattttggataagtatttga |
51855235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 8944678 - 8944470
Alignment:
| Q |
35 |
tcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagttaattctgtttaa |
134 |
Q |
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| T |
8944678 |
tcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatgtagcaagttattggacaaacttaattctgtttaa |
8944579 |
T |
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| Q |
135 |
tgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattttggaga |
234 |
Q |
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| T |
8944578 |
tgtttaaataatggatgctcccctgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattttggaga |
8944479 |
T |
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| Q |
235 |
agtatttga |
243 |
Q |
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||||||||| |
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| T |
8944478 |
agtatttga |
8944470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 1869574 - 1869515
Alignment:
| Q |
3 |
atcaaccttggaatgtacatatcacaaaat--tatcaaagtaatgaagaggtttcagatg |
60 |
Q |
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| T |
1869574 |
atcaaccttaggatgtacatatcaccaaatattatcaaagtaatgaagagacttcagatg |
1869515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 57 - 243
Target Start/End: Original strand, 26887003 - 26887189
Alignment:
| Q |
57 |
gatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagttaattctgtttaatgtttcaataatggatgctccc |
156 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |
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| T |
26887003 |
gatgtatatcgcttgattgggaagtggccggcagagaccagatctagcaagttattggacaaacttaattctgtttaatgtttaaataatggatgctccc |
26887102 |
T |
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| Q |
157 |
ttgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattttggagaagtatttga |
243 |
Q |
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| T |
26887103 |
ttgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattttggaaaagtatttga |
26887189 |
T |
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