View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10213_low_24 (Length: 243)
Name: NF10213_low_24
Description: NF10213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10213_low_24 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 31630901 - 31630678
Alignment:
| Q |
13 |
atcacatgcatataggtttgtaaatttatcttctttaaaacttaaaagtgcaagctaattgacacaatcaccttagatttattaagataataataagagc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31630901 |
atcacatgcatataggtttgtaaatttatcttctttaaaa-------gtgcaagctcattgacacaatcaccttagtgttattaagataataataagagc |
31630809 |
T |
|
| Q |
113 |
aactaactaaccatgcaaactcgatggatctaaagctccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtccn |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31630808 |
aactaactaaccatgcaaactcgatggatctaaagttccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtcct |
31630709 |
T |
|
| Q |
213 |
nnnnnnccacaatccgaaagctcattccacc |
243 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
31630708 |
ttttttccacaatccgaaagctcattccacc |
31630678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 31646829 - 31646704
Alignment:
| Q |
118 |
actaaccatgcaaactcgatggatctaaagctccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnn |
217 |
Q |
| |
|
|||||||||||| |||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31646829 |
actaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagtcctttttt |
31646730 |
T |
|
| Q |
218 |
nccacaatccgaaagctcattccacc |
243 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
31646729 |
tccacaatccgaaagctcattccacc |
31646704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 31652332 - 31652215
Alignment:
| Q |
126 |
tgcaaactcgatggatctaaagctccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnnnccacaat |
225 |
Q |
| |
|
|||||||||||||||||||||| | |||| |||||||||||||| ||||||| |||| ||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
31652332 |
tgcaaactcgatggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgatagtcctccttttccacaat |
31652233 |
T |
|
| Q |
226 |
ccgaaagctcattccacc |
243 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
31652232 |
cggaaagctcattccacc |
31652215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 31657136 - 31657019
Alignment:
| Q |
126 |
tgcaaactcgatggatctaaagctccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnnnccacaat |
225 |
Q |
| |
|
|||||||||||||||||||||| | |||| |||||||||||||| ||||||| |||| ||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
31657136 |
tgcaaactcgatggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgacagtcctccttttccacaat |
31657037 |
T |
|
| Q |
226 |
ccgaaagctcattccacc |
243 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
31657036 |
cggaaagctcattccacc |
31657019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 31638125 - 31638000
Alignment:
| Q |
118 |
actaaccatgcaaactcgatggatctaaagctccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnn |
217 |
Q |
| |
|
|||||||||| | |||| ||||||||| | | |||| |||||||||| ||| ||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
31638125 |
actaaccatgaacactcaatggatctacggttgcatcaggcttcatgccccagaaaagtatagcattacccatctttggcttaattgaaagtcccttttt |
31638026 |
T |
|
| Q |
218 |
nccacaatccgaaagctcattccacc |
243 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
31638025 |
tccacaatcagaaagctcattccacc |
31638000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 238
Target Start/End: Original strand, 9104726 - 9104847
Alignment:
| Q |
117 |
aactaaccatgcaaactcgatggatctaaagctccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnn |
216 |
Q |
| |
|
|||||||||||||| || |||| |||||||| | |||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
9104726 |
aactaaccatgcaagcttgatgcatctaaagttgcatccggcttcatgctccagaaaagtaaagcatcacctctctttggcttaattgaaagtccttttt |
9104825 |
T |
|
| Q |
217 |
nnccacaatccgaaagctcatt |
238 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
9104826 |
tcccacaatcagaaagctcatt |
9104847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University