View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10213_low_25 (Length: 241)
Name: NF10213_low_25
Description: NF10213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10213_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 20895116 - 20894893
Alignment:
| Q |
1 |
taccgacaggaaaagggaaattcggaatagttgtccaagaattttcaccaaaagtatgaatttgtgtcacttttccaccaaattcattagccacaactgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20895116 |
taccgacaggaaaagggaaattcggaatagttgtccaagaattttcaccaaaagtatgaatttgtgtcaattttccaccaaattcattagccacaactgc |
20895017 |
T |
|
| Q |
101 |
tagcaacttgtatttgtcatgcacatgatcatagccaaagccatcatatgtgatccatttatgatcatcataacaatcaagggttggagattttttggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20895016 |
tagcaacttgtatttgtcatgcacatgatcatagccaaagccatcatatgtgatccatttatgatcatcataacaatcaagggttggagattttttggat |
20894917 |
T |
|
| Q |
201 |
ttccattcgatagaagggttcaac |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
20894916 |
ttccattcgatagaagggttcaac |
20894893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 20585526 - 20585749
Alignment:
| Q |
1 |
taccgacaggaaaagggaaattcggaatagttgtccaagaattttcaccaaaagtatgaatttgtgtcacttttccaccaaattcattagccacaactgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| |||||| |
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| T |
20585526 |
taccgacaggaaaagggaaattcggaatagttgtccaagaattttcaccaaaagtatgaatttgtgtcacttgtcccccaaatccattagccagaactgc |
20585625 |
T |
|
| Q |
101 |
tagcaacttgtatttgtcatgcacatgatcatagccaaagccatcatatgtgatccatttatgatcatcataacaatcaagggttggagattttttggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20585626 |
tagcaacttgtatttgtcatgcacatgatcatagccaaagccatcatatgtgatccatttatcatcatcataacaatcaagggttggagattttttggat |
20585725 |
T |
|
| Q |
201 |
ttccattcgatagaagggttcaac |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
20585726 |
ttccattcgatagaagggttcaac |
20585749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 20611677 - 20611903
Alignment:
| Q |
1 |
taccgacaggaaaagggaaattcggaatagttgtccaagaattttcaccaaaagtatgaatttgtgtcacttttccaccaaattcattagccacaactgc |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
20611677 |
taccgacaggaagagggaaattcggaatagttgtccaagaattttcaccaaaagtatgaatttgtatcacttttccaccaaattcattagcatgaactgc |
20611776 |
T |
|
| Q |
101 |
tagcaacttgtatttgtcatgcacatgatcatagccaaagccatcatatgtgatcc---atttatgatcatcataacaatcaagggttggagattttttg |
197 |
Q |
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||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||||||||||||||||||| |
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| T |
20611777 |
tagaaccttgtatttgtcattcacatgatcatagccaaagccataatatgtgatccaatatttatgagattcataagaatcaagggttggagattttttg |
20611876 |
T |
|
| Q |
198 |
gatttccattcgatagaagggttcaac |
224 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
20611877 |
gatttccattcgatagaagggttcaac |
20611903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 20596382 - 20596617
Alignment:
| Q |
1 |
taccgacaggaaaagggaaattcggaatagttgtccaagaattttcaccaaaagtatgaatttgtgtcacttttccaccaaattcattagccaca----- |
95 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || | ||||||||||| |
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| T |
20596382 |
taccgataggaaaagggaaattcggaatagttgtccaagaattttcaccaaaagtatgaatttgtgtcaaatttttaataattccattagccacactaca |
20596481 |
T |
|
| Q |
96 |
----actgctagcaacttgtatttgtcatgcacatgatcatagccaaagccatcatatgtgatcca---tttatgatcatcataacaatcaagggttgga |
188 |
Q |
| |
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|||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||| | |||| |||||||||||||| |
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| T |
20596482 |
cgcaactgctagcaccttgtatcggtcattcacatgatcatagccaaagccatgatatgtgatccaatatttatgatatttataagaatcaagggttgga |
20596581 |
T |
|
| Q |
189 |
gattttttggatttccattcgatagaagggttcaac |
224 |
Q |
| |
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||| |||||||||||||||||||||||||||||||| |
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| T |
20596582 |
gatattttggatttccattcgatagaagggttcaac |
20596617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 20603877 - 20604100
Alignment:
| Q |
13 |
aagggaaattcggaatagttgtccaagaattttcaccaaaagtatgaatttgtgtcacttttccaccaaattcattagccacaac---------tgctag |
103 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| | ||| | ||||||||||||| |||||| |
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| T |
20603877 |
aagggaaattcggaatacttgtccaagaattttcaccaaaagtatgaatttgtgtcaattttttaacaattccattagccacaacacacacaactgctag |
20603976 |
T |
|
| Q |
104 |
caacttgtatttgtcatgcacatgatcatagccaaagccatcatatgtgatcca---tttatgatcatcataacaatcaagggttggagattttttggat |
200 |
Q |
| |
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|| ||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||| |||||| ||||||||||||||||| |||||||| |
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| T |
20603977 |
caccttgtatcggtcattcacatgatcatagccaaagccatgatatgtgatccaatatttatgatattcataagaatcaagggttggagatattttggat |
20604076 |
T |
|
| Q |
201 |
ttccattcgatagaagggttcaac |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
20604077 |
ttccattcgatagaagggttcaac |
20604100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 20575825 - 20575905
Alignment:
| Q |
123 |
acatgatcatagccaaagccatcatatgtg---atccatttatgatcatcataacaatcaagggttggagattttttggat |
200 |
Q |
| |
|
||||||||||||||||| ||| ||||||| || |||| || || ||||||||||||||||| ||||||||||||||| |
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|
| T |
20575825 |
acatgatcatagccaaatccacgatatgtggtaatgcattgattatattcataacaatcaagggtgggagattttttggat |
20575905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 45089275 - 45089317
Alignment:
| Q |
15 |
gggaaattcggaatagttgtccaagaattttcaccaaaagtat |
57 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
45089275 |
gggaaattttgaatagttgtctaagaattttcaccaaaagtat |
45089317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 23682130 - 23682098
Alignment:
| Q |
30 |
gttgtccaagaattttcaccaaaagtatgaatt |
62 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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|
| T |
23682130 |
gttgtccaagaattttcaccaaaagtataaatt |
23682098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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