View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10213_low_3 (Length: 550)
Name: NF10213_low_3
Description: NF10213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10213_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 6 - 542
Target Start/End: Complemental strand, 10567053 - 10566517
Alignment:
| Q |
6 |
caatgagatggacatcaactcggaggttccatgtatggggactgattatttagagttcatgaagacgattagatctattccagaccgtggtgagtttgaa |
105 |
Q |
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| T |
10567053 |
caatgagaaggaaaacaactcggaggttccatgtatggggactgattatttagagttcatgaagacgattagatctattccagaccgtggtgagtttgaa |
10566954 |
T |
|
| Q |
106 |
agtcaatatagtgctatctctgagttatatagttgttctggaccctcagtaacatcctcttggcaaaaggaccaaagtaaatttgtagtgatgtccactg |
205 |
Q |
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| T |
10566953 |
agtcaatatagtgctatctctgagttatatagttgttctggaccctcagtaacatcctcttggcaaaaggaccaaagtaaatttgtagtgatgtccactg |
10566854 |
T |
|
| Q |
206 |
atgctatggataaggattcaaataatagacattctgtagacgttcatgacgaagcttacaagagacagttccttgaaggcaatgctgattcttcttttaa |
305 |
Q |
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| T |
10566853 |
atgctatggataaggattcaaataatagacattctgtagatgttcatgacgaagcttacaagagacagttccttgaaggcaatgctgattcttcttttaa |
10566754 |
T |
|
| Q |
306 |
ctttctattgaatcaaagctatgccagtacgtcttttggtgagctactgcattctggtttggaagattcagaggtggaacagtataaatatttagaaaca |
405 |
Q |
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| T |
10566753 |
ctttctattgaatcaaagctatgccagtacgtcttttggtgagctactgcattctggtttggaagattcagaggtggaacagtataaatatttagaaaca |
10566654 |
T |
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| Q |
406 |
aataatgatgcatgcttaaacaacacacataaatcacttgatatgtcctggtttccagaatcaagatttgtttccgagactgcaattcaaaacagaacag |
505 |
Q |
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| T |
10566653 |
aataatgatacatgcttaaacaacacatataaatcacttgatatgtcctggtttccagaatcaagatttgtttccgagactgcaattcaaaacagaacag |
10566554 |
T |
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| Q |
506 |
aaacattgtctacagttgtgtcttctgatgtccatct |
542 |
Q |
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| T |
10566553 |
aaacattgtctacagttgtgtcttctggtggccatct |
10566517 |
T |
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