View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10213_low_31 (Length: 222)
Name: NF10213_low_31
Description: NF10213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10213_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 49321087 - 49320913
Alignment:
| Q |
35 |
actcgagggtaacttagattgcattttacggacaagctacggtagaagtaaatacataaagacatatatcatctcaaaagttaacattttgttcatcgcc |
134 |
Q |
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| T |
49321087 |
actcgagggtaacttagattgcattttatggacaagctacggtagaactaaatacataaagacatatatcatctcaaaagttaacattttgttcatcgcc |
49320988 |
T |
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| Q |
135 |
aaataccccaaatcaaatgcttttttattttaagctaaacatttgctaaatgacgacttgtccgtcctcaattctg |
210 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49320987 |
aaataccccaaatcaaatgct-ttttattttaagctaaacatttgctaaatgacgacttgtccgtcctcaattctg |
49320913 |
T |
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