View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10213_low_4 (Length: 472)

Name: NF10213_low_4
Description: NF10213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10213_low_4
NF10213_low_4
[»] chr4 (5 HSPs)
chr4 (139-208)||(13072495-13072564)
chr4 (31-103)||(13071938-13072010)
chr4 (230-294)||(13072774-13072838)
chr4 (313-384)||(13067337-13067408)
chr4 (368-414)||(13056270-13056315)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 13072495 - 13072564
Alignment:
Q  139 ttcaggaactatgttgtacagcctattgaatctttcttttgaactaaaactttgacccaagatccttcaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13072495 ttcaggaactatgttgtacagcctattgaatctttcttttgaactaaaactttgacccaagatccttcaa 13072564  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 13071938 - 13072010
Alignment:
Q  31 attagtcaataacattacttataaggtgaggatttcctccatttataaacaaatttttagacaacatttcatc 103  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13071938 attaatcaataacattgcttataaggtgaggatttcctccatttataaacaaatttttagacaacatttcatc 13072010  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 13072774 - 13072838
Alignment:
Q  230 tctctacctccatcaccacttctcctccaatgtgagatatgttgtggcatggtaagtgtgaagtt 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13072774 tctctacctccatcaccacttctcctccaatgtgagatatgttgtggcatggtaagtgtgaagtt 13072838  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 384
Target Start/End: Original strand, 13067337 - 13067408
Alignment:
Q  313 atcaattaattactgacacacatacatagtttgctacaatttttgtcaatgtgttttttctaacttaaaatg 384  Q
    ||||||| ||||  ||||||| || ||||||||||||||||| ||||||| |||| |||| |||||||||||    
T  13067337 atcaattgattatggacacacttatatagtttgctacaatttgtgtcaatatgttatttcgaacttaaaatg 13067408  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 414
Target Start/End: Original strand, 13056270 - 13056315
Alignment:
Q  368 ttttctaacttaaaatgtttgcaggtaacaattgaggaccactctca 414  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||    
T  13056270 ttttctaacttaaaatgtta-caggtaacaattgaggaccaccctca 13056315  T

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