View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10213_low_8 (Length: 432)
Name: NF10213_low_8
Description: NF10213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10213_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 30133917 - 30133505
Alignment:
| Q |
19 |
atactgttagaggttaaagctaattacttggaaatgaatccaaatcttgtttggagaaaagggtgaacgtgtaacaagttaattgaggattgagatgacg |
118 |
Q |
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| T |
30133917 |
atactgttagaggataaagctaattacttggaaatgaatccaaatcttgtttggagaaaagggtgaacgtgtaacaagttaattgaggattgagatgacg |
30133818 |
T |
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| Q |
119 |
gtggagaatgaattaatgtgaatgtgagaaataagaataagaatgcatattataatatttggatttagaatttggtgtctttgttcacat--gccctacc |
216 |
Q |
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| T |
30133817 |
gtggagaatgaattaatgtgaatgtgagaaataagaataagaatgcatattataatatttggatttagaatttggtgtcttcgttcacatgcgccctacc |
30133718 |
T |
|
| Q |
217 |
gaccagactttgatgtagatt-atcttttctcatgccttgtcctgcaagcaaggcaaactttgctccatttgttgtatctttctatggttttgtttgtgt |
315 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30133717 |
gaccagactttgatgtagattaatcttttctcatgccttgtcctgcaagcaagccaaactttgctccatttgttgtatctttctatggttttgtttgtgt |
30133618 |
T |
|
| Q |
316 |
agcaccggcattattgatcgaagatgtgttggtgttgtaccccgacattacatcgacacatgtaattatatttaattgattgtcagtgtctacgtgttag |
415 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||| |
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| T |
30133617 |
agcaccggcattattgatcgaagatgtgtcggtgttgtaccccgacattatatcgacacatgtaattatatttaattatttgtcggagtctacgtgttaa |
30133518 |
T |
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| Q |
416 |
tgtctgtgctgct |
428 |
Q |
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||| |||| |||| |
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| T |
30133517 |
tgtttgtgatgct |
30133505 |
T |
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