View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10214_low_1 (Length: 522)
Name: NF10214_low_1
Description: NF10214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10214_low_1 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Complemental strand, 2928870 - 2928367
Alignment:
| Q |
18 |
attttatgacttt-gttttgtctaactctttgtttttatagtaaactactacctggttttaaattgtggccgcgattgcggattcatcgtgactcttgac |
116 |
Q |
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| T |
2928870 |
attttatgacttttgttttgtctaactctttgtttttatagtaaactactacctggttttaaattgtggccgcgattgcgaattcattgtgactcttgac |
2928771 |
T |
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| Q |
117 |
attatactaaaatgcaggtaaatgtagtcaattgcggttgtgatgtttttgtaaaaaattat---------------gaccgcacttgcagttgtggacc |
201 |
Q |
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| T |
2928770 |
attatactaaaatgcaggtaaatgtagtcaattgcggttgtgatgtttttgtaaaaaattataatattttatattatgaccgcacttgcagttgtggacc |
2928671 |
T |
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| Q |
202 |
gtaatttaactctaggatttaatatgtataggtctcggaggccacttgctaatttcagctaatgaatgataatagagacttattggtttatgttggtttt |
301 |
Q |
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| T |
2928670 |
gtaatttaattctagg------------taggtctcggaggccacttgctaatttcagctaatgaatgataatagagacttattggtttatgttggtttt |
2928583 |
T |
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| Q |
302 |
cgtgttaattaggttgcgcgtgttgttgctcgacactttgctgaacaggtaacaaagaacttgtggttttatgctatacataggatgcttcagatatttg |
401 |
Q |
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| T |
2928582 |
cgtgttaattaggttgcgcgtgttgttgctcgacactttgttgaacaggtaacaaagaacttgtggttttatgctatacataggatgct-----tatttg |
2928488 |
T |
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| Q |
402 |
tcaccattgattatgaaaaaagtgtgttaccacttgtcaatagactacctttcaaccggcggtatgattaattcattatctttcttttctgaaccattca |
501 |
Q |
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| T |
2928487 |
tcaccattgattatgaaaaaagtgtgttaccacttgtcaatagactacctttcaaccggcggtatgattaattcattatctttcttttctaaaccattca |
2928388 |
T |
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| Q |
502 |
ttttcatttcattgacagagc |
522 |
Q |
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| T |
2928387 |
ttttcatttcattgatagagc |
2928367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 245 - 521
Target Start/End: Original strand, 2310431 - 2310703
Alignment:
| Q |
245 |
acttgctaatttcagctaatgaatgataatagagacttattggtttatgttggttttcgtgttaattaggttgcgcgtgttgttgctcgacactttgctg |
344 |
Q |
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| T |
2310431 |
acttgctaatttcagctaatg----ataatagagactaatcagtttatgttggttttcgtgttaattaggttgcgcatgttgttgctcgacactttgctg |
2310526 |
T |
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| Q |
345 |
aacaggtaacaaagaacttgtggttttatgctatacataggatgcttcagatatttgtcaccattgattatgaaaaaagtgtgttaccacttgtcaatag |
444 |
Q |
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| T |
2310527 |
aaaagataacaaagagcttctggttttatgctatacataggatgcttgagatatttgtcaccattgattttgaaaaaagattgtcaccacttatcgatcg |
2310626 |
T |
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| Q |
445 |
actacctttcaaccggcggtatgattaattcattatctttcttttctgaaccattcattttcatttcattgacagag |
521 |
Q |
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| T |
2310627 |
actacctttcaatcgtcggtatgactaattcattatctttcttttctaaaccattcattttcatttcattgatagag |
2310703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 2310168 - 2310397
Alignment:
| Q |
18 |
attttatgactttgttttgtctaactctttgtttttatagtaaactactacctggttttaaattgtggccgcgattgcggattcatcgtgactcttgaca |
117 |
Q |
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| T |
2310168 |
attttatgattttgttttgtctaactctttgtttttatagtaaactactacctggttttaaattgcggccgcgattgcggattcattgtaactcttgata |
2310267 |
T |
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| Q |
118 |
ttatactaaaatgcaggtaaatgtagtcaattgcggttgtgatgtttttgtaaaaa----------attatgaccgcacttgcagttgtggaccgtaatt |
207 |
Q |
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| T |
2310268 |
ttacactaaaattcaggtaaatgtagtcaattgcggttgtgacgtttttgtagaaaattttaatatattgtgactgcatttccagttgtggaccgcaatt |
2310367 |
T |
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| Q |
208 |
taactctaggatttaatatgtataggtctc |
237 |
Q |
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| T |
2310368 |
taattctatgatttaatatggataggtctc |
2310397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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