View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10214_low_13 (Length: 224)
Name: NF10214_low_13
Description: NF10214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10214_low_13 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 434839 - 434624
Alignment:
| Q |
10 |
ggacatcatggatctcattttaagattaggg-ttttcgttgtcttccaatttcatggatgtcgcccagatttacaaaggtagtttttcgcgtttgcttca |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
434839 |
ggacatcatggatctcattt-aagattagggattttcgtcgtcttccaatttcatggatgtcgcccagattttcaaaggtagtttttcgcgtttgcttca |
434741 |
T |
|
| Q |
109 |
gttaattagtgtttttgttagaattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacc-ttgtcattgagtctc |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
434740 |
gttaattagtgtttttgtgagaattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctc |
434641 |
T |
|
| Q |
208 |
aattgacttcgactcat |
224 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
434640 |
aattgacttcgactcat |
434624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 17512681 - 17512754
Alignment:
| Q |
51 |
cttccaatttcatggatgtcgcccagatttacaaaggtagtttttcgcgtttgcttcagttaattagtgttttt |
124 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
17512681 |
cttccaatttcatggatgtcgcctagattttcaaatgtagtttttcgcgtttgtttcagttagttattgttttt |
17512754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 17512780 - 17512864
Alignment:
| Q |
130 |
aattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacc-ttgtcattgagtctcaattga |
213 |
Q |
| |
|
|||| ||||| |||||| |||||||| || | |||||||||||||| | | |||||| |||| ||||||||||||||||||||| |
|
|
| T |
17512780 |
aattgaattcaattcatttaagattagggcttcaaattcataaattctacgattagttgtacctttgtcattgagtctcaattga |
17512864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University