View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10214_low_2 (Length: 431)
Name: NF10214_low_2
Description: NF10214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10214_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 132626 - 133050
Alignment:
| Q |
1 |
ttgtagttccaaacagcgacattgatctcacgaaggccttcaatgagggaaaacacaaacttctcttgaaaaacagggttttttccaccatctgaaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
132626 |
ttgtagttccaaacagcgacattgatctcacgaaggccttcaatgagggaaaacacaaacttctcttgaaaaacagggttttttccaccatctgaaatca |
132725 |
T |
|
| Q |
101 |
aaattgaaggagtaaacaaaaagtcaagataagggtcaaactaattaacct----acctacctacctacgtacctgtgcatgttttggttcggaacttgt |
196 |
Q |
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| T |
132726 |
aaattgaaggagtaaacaaaaagtcaagataagggtcaaactaattaacctacctacctacctacctacgtacctgtgcatgttttggttcggaacttgt |
132825 |
T |
|
| Q |
197 |
tggtcgcgtattcaaggcaaacataaggatcttgtcttgaaatccattctgtgtctttcaatttcgagcaacacaccactgcaaatcaaaccaaacgaac |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
132826 |
tggtcgcgtattcaaggcaaacataaggatcttgtcttgaaatccattctgtgtctttcaatttcgagcaacacaccactgcaaatcaaaccaaacgaac |
132925 |
T |
|
| Q |
297 |
cattcatcatgtct---taatagtcaaatcaaataacactgttgttgtgttatgtttgcttaccagtaacctcgagaggttgcccttggatccctgctat |
393 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
132926 |
cattcatcatgtcttaataatagtcaaatcaaataacactgttgttgtgttatgtttgcttaccagtaacctcgagaggttgcccttggatccctgctat |
133025 |
T |
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| Q |
394 |
cgttccgctagacatcatcgttttc |
418 |
Q |
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| T |
133026 |
cgttccgctagacatcatcgttttc |
133050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 160664 - 160564
Alignment:
| Q |
167 |
tacctgtgcatgttttggttcggaacttgttggtcgcgtattcaaggcaaacataaggatcttgtcttgaaatccattctgtgtctttcaatttcgagca |
266 |
Q |
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| T |
160664 |
taccagtgcatgttcttgttcggaacttggtggaagcgtattcgatgcaaacgtagggatcttgtcttgaaatccattcagtgtctttcaatttcgagca |
160565 |
T |
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| Q |
267 |
a |
267 |
Q |
| |
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| T |
160564 |
a |
160564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 160836 - 160756
Alignment:
| Q |
6 |
gttccaaacagcgacattgatctcacgaaggccttcaatgagggaaaacacaaacttctcttgaaaaacagggttttttcc |
86 |
Q |
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||||||||| | |||||||||||||||||||||||||| |||| || | |||||||||||||| |||||||||||||| |
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| T |
160836 |
gttccaaacgacaacattgatctcacgaaggccttcaattaggggaagtatgaacttctcttgaaatacagggttttttcc |
160756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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