View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10214_low_3 (Length: 427)
Name: NF10214_low_3
Description: NF10214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10214_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 37430805 - 37430426
Alignment:
| Q |
18 |
cataggaattgttctattaacgaattaaacactgtataggtaaagcattaagatttgtcaaaccagaacaccagaaaagatttgtcaaaccaggacagga |
117 |
Q |
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| T |
37430805 |
cataggaattattctattaacgaattaaacactgtataggtaaagcattaagatttgtcaaaccagaacaccagaaaagatttgtcaaaccaggacagga |
37430706 |
T |
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| Q |
118 |
aaacactaatagtccaatgcacaagacaagactaccacaatttcaaatacaaagagaataagacatatatgcaatattcttttcccttattcattcttct |
217 |
Q |
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| T |
37430705 |
aaacactaatagtccaatgcacaagacaagactaccacaatttcaaatacaaagagaataagacatatatgcaatattcttttccctgattcattctgct |
37430606 |
T |
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| Q |
218 |
tatcaactactatatgtttgcaatcaatgctttgtaggtcatgcttctgcatctttcaaacctcttcataacctctatagatataggctaaaataatcaa |
317 |
Q |
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| T |
37430605 |
tatcaactactatatggttgcaatcaatgcttagtaggtcatgcttctgcatctttcaaacctcttcataacatctatagatagaggctaaaataatcaa |
37430506 |
T |
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| Q |
318 |
atccaaaatcctaaacaagagagtataatttcctctaaatggggtccttttgttttctatttccttatcttgcctttcac |
397 |
Q |
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| T |
37430505 |
ataaaaaatcctcaagaagagagtatagtttcctctaaatggggtccttttgttttctatttccttatcttgcctttcac |
37430426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 397
Target Start/End: Complemental strand, 37698509 - 37698462
Alignment:
| Q |
350 |
ctctaaatggggtccttttgttttctatttccttatcttgcctttcac |
397 |
Q |
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| T |
37698509 |
ctctaaatggggtccttttttattctattgccttattttgcctttcac |
37698462 |
T |
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