View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10214_low_4 (Length: 336)
Name: NF10214_low_4
Description: NF10214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10214_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 2 - 318
Target Start/End: Complemental strand, 32424440 - 32424130
Alignment:
| Q |
2 |
gttaattgtgttaagtggatggataatgaattggaacacattgttatattcattaaccacatatgtgaaccatgtcagccatctagattattgtggaatt |
101 |
Q |
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| T |
32424440 |
gttaattgtgttaagtggatggataatgaattggaacacattgttatattcattaaccacatatgtgaaccatgtcagccatctagattattgtggaatt |
32424341 |
T |
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| Q |
102 |
ttgatgtaaattggtgtatcaaaatataaattctattatgtaacatcatatatattccaatagaacacaatgataacatactatactcttcattagagtg |
201 |
Q |
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| T |
32424340 |
ttgatgtaaattggtgtttcaaaatataaattctatcatgtaacatc----atattccaataga--acaatgataccgtactatcctcttcattagagtg |
32424247 |
T |
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| Q |
202 |
atttaattgatctataaagggttatatggttgttggaatttacagctaggaggcccttcatggaatgtaggcttgggaagaagggattcaatcacagcta |
301 |
Q |
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| T |
32424246 |
atttaattgatctataaagggttatatggttgttggaatttacagctaggaggcccttcatggaatgtaggcttgggaagaagggattcaatcacagcta |
32424147 |
T |
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| Q |
302 |
gtagatctgatgccaat |
318 |
Q |
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| T |
32424146 |
gtagatctgatgccaat |
32424130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 230 - 318
Target Start/End: Complemental strand, 32431306 - 32431218
Alignment:
| Q |
230 |
gttgttggaatttacagctaggaggcccttcatggaatgtaggcttgggaagaagggattcaatcacagctagtagatctgatgccaat |
318 |
Q |
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| T |
32431306 |
gttgttggaatttacagctaggaggcccttcatgggatgtaggcttgggaagaagggactcaatcacagctagtaggtctgatgccaat |
32431218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 37137126 - 37137069
Alignment:
| Q |
4 |
taattgtgttaagtggatggataatgaattggaacacattgttatattcattaaccac |
61 |
Q |
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| T |
37137126 |
taattgtgttcagtggatggctaatgaattgcgacaccttgctatattcattaaccac |
37137069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 3603535 - 3603477
Alignment:
| Q |
2 |
gttaattgtgttaagtggatggataatgaattggaacacattgttatattcattaacca |
60 |
Q |
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| T |
3603535 |
gttaattgtgttaagtggatggttaatgaactgggataccttattacattcattaacca |
3603477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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