View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10214_low_5 (Length: 311)
Name: NF10214_low_5
Description: NF10214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10214_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 28545969 - 28545686
Alignment:
| Q |
18 |
gcttatttttgccaatgatggtagttgaatctttgagattcttatcttttctactcttatcgtccctcctttcaataatcatatcaagcccacattatca |
117 |
Q |
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| T |
28545969 |
gcttatttttgccaatgatggtagttgaatcttttagattcttatcttttctactcttatcgtccctcctttcaataatcatatcaagcccacattatca |
28545870 |
T |
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| Q |
118 |
tatcactccatt-------------aattaattaatttaagatatacttgatagagtttgaatgaaaatggaatattgcacacatataaaacaatgaatt |
204 |
Q |
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| T |
28545869 |
tatcactccattcattaattaattaaattaattaattttagatatacttgatagagtttgaatgaaaatggaatattgcacacatataaaacaatgaatt |
28545770 |
T |
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| Q |
205 |
agctagtatattcattcaaatcattgatgtttttataggagtacaaggggtactcctttcatgataacattatatatacttatat |
289 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28545769 |
agctagtatattcattcaaatcattgatg-ttttataggagtacaaggggtactcccttcatgataacattatatatacttatat |
28545686 |
T |
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