View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10214_low_6 (Length: 306)
Name: NF10214_low_6
Description: NF10214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10214_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 1240755 - 1241053
Alignment:
| Q |
8 |
gagagagaagaaggaaatgatggcaagtgcagattcaggtatttgaacaagcttgttcaaggagataggatcaacttcaggagaagaagcagatacttga |
107 |
Q |
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| T |
1240755 |
gagagtgaagaaggaaatgatggcaagtgcagattcaggtatttgaacaagcttgttcaaggagataggatcaacttcaggagaagaagcagatacttga |
1240854 |
T |
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| Q |
108 |
acaaatagggttgtgaagagaggaacaatgaaagtaaggaagatgaaggaaacataagaaatgagttttccaacacaagatgagtgatcaagagcacacc |
207 |
Q |
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| T |
1240855 |
acaaatagggttgtgaagagaggaacaacgaaagtaaggaagatgaaggaaacataagaaatgagttttccaacacaagatgagtgatcaagagcacacc |
1240954 |
T |
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| Q |
208 |
atttaagacatatccgaaagtttcttagttcatcaaagatcatggattttgatcttgcataagatggttgaagtaacaaaggaacattgtgttggtgct |
306 |
Q |
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| T |
1240955 |
atttaagacatatccgaaagtttcttagttcatcaaagatcatggattttgatcttgcataagatggctgaagtaacaaaggaacattgtgttggtgct |
1241053 |
T |
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