View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10214_low_7 (Length: 292)
Name: NF10214_low_7
Description: NF10214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10214_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 35192845 - 35192705
Alignment:
| Q |
1 |
agaagagattcagaacaaaaattcactccatccaaccattctctccaacttcacttcatgcccaacaacaacaatacaatgatatcatgatatcattatt |
100 |
Q |
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| T |
35192845 |
agaagagattcagaacaaaaattcactccatccaaccattctctccaacttcacttcatgcccaacaacaacaatacaatgatatcatgatatcattatt |
35192746 |
T |
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| Q |
101 |
gttgataaaatccaatttctcagtaaaagaagaattaatgg |
141 |
Q |
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| T |
35192745 |
gttgataaaattcaatttctcagtaaaagaagaattaatgg |
35192705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 35192599 - 35192571
Alignment:
| Q |
246 |
cttatgattctatcttccctcgtcaccac |
274 |
Q |
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| T |
35192599 |
cttatgattctatcttccctcgtcaccac |
35192571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 44747906 - 44747775
Alignment:
| Q |
1 |
agaagagattcagaacaaaaattcactccatccaaccattctctccaacttcacttcatgcccaacaacaacaatacaatgatatcatgatatcattatt |
100 |
Q |
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| T |
44747906 |
agaagagattcagaacaaaa-ttcactccatccaaccattctctccaacttcacttcatgcccaacaacaacaatacaatgata--------tcattatt |
44747816 |
T |
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| Q |
101 |
gttgataaaatccaatttctcagtaaaagaagaattaatgg |
141 |
Q |
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| T |
44747815 |
gttgataaaatccaatttctcagtaaaagaagaattaatgg |
44747775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 1822839 - 1822803
Alignment:
| Q |
105 |
ataaaatccaatttctcagtaaaagaagaattaatgg |
141 |
Q |
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| T |
1822839 |
ataaaatccaatttctcagtaaaagaagaattaatgg |
1822803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 26481483 - 26481521
Alignment:
| Q |
36 |
ccattctctccaacttcacttcatgcccaacaacaacaa |
74 |
Q |
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| T |
26481483 |
ccattctctccaacttcacttcatgctcaacaacaacaa |
26481521 |
T |
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