View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10215_high_2 (Length: 483)
Name: NF10215_high_2
Description: NF10215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10215_high_2 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 20 - 472
Target Start/End: Original strand, 27526380 - 27526832
Alignment:
| Q |
20 |
ggaaatagttggagaactactaatgacataaatgattcatgggaaaggtaaaaaccatgcactcaatttgttggtactagtagttttttgaaatgtaaac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27526380 |
ggaaatagttggagaactactaatgacataaatgattcatgggaaaggtaaaaaccatgcactcaatttgttggtactagtagttttttgaaatttaaac |
27526479 |
T |
|
| Q |
120 |
aatttgttactaaaattgaacaattgtgtatccttagctactagctaataaaactaacttgttttatgcagtatgatttcgagggccgacctgaatgaag |
219 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27526480 |
aatttgttactaaaattgaactattgtgtatccttagctactagctaataaaactaacttgttttatgcagtatgatttcgagggccgacctgaatgaag |
27526579 |
T |
|
| Q |
220 |
tttatgccgagcatgcaagacctggtggctggaatggttagaacttcatttgtttaacaattttttgtgaaagaattgagtttgcatcttgatttcatga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27526580 |
tttatgccgagcatgcaagacctggtggctggaatggttagaacttcatttgtttaacaattttttgtgaaagaattgagtttgcatcttgatttcatga |
27526679 |
T |
|
| Q |
320 |
tataatttatgactcaagatattcattaaacattttaactcaacagatcctgacatgcttgaggttggaaatggagggatgacaaaaaatgaatatattg |
419 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27526680 |
tataatttatgactcaagatattcattaaatattttaactcaacagatcctgacatgcttgaggttggaaatggagggatgacaaaaaatgaatatattg |
27526779 |
T |
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| Q |
420 |
ttcacttcagtttgtgggccatttcaaaggttctatcattctcttgtcttcat |
472 |
Q |
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| T |
27526780 |
ttcacttcagtttgtgggccatttcaaaggttctatcattctcttgtcttcat |
27526832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 20 - 462
Target Start/End: Original strand, 27532033 - 27532476
Alignment:
| Q |
20 |
ggaaatagttggagaactactaatgacataaatgattcatgggaaaggtaaaaaccatgcactcaatttgttggtactagtagttttttgaaatgtaaac |
119 |
Q |
| |
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||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
27532033 |
ggaaatagttggagaactactggtgacataactgatacatgggaaaggtaaaaaccatgcactcaattggtt-------------ttttgaaatgtaaac |
27532119 |
T |
|
| Q |
120 |
aatttg-----ttactaaaattgaacaattgtgtatcct--------tagctactagctaataaaactaacttgttttatgcagtatgatttcgagggcc |
206 |
Q |
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|| || |||||||| ||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
27532120 |
aagttcgatatttactaaagttgaacaatcgtgtatcctactatccttagctactagctaataaaattaacttgttttatgcagtatgatttcaagggct |
27532219 |
T |
|
| Q |
207 |
gacctgaatgaagtttatgccgagcatgcaagacctggtggctggaatggttagaacttcatttgtttaacaattttttgtgaaaga-attgagtttgca |
305 |
Q |
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||| |||||||||||||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| || ||||||||| |
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| T |
27532220 |
gacatgaatgaagtttatgctgagcttgcaagacctggtggttggaatggttagaatttcatttgtttaacaactttttgtgaaagacatcgagtttgca |
27532319 |
T |
|
| Q |
306 |
tcttgatttcatgatataatttatgactcaagatattcattaaacattttaactcaacagatcctgacatgcttgaggttggaaatggagggatgacaaa |
405 |
Q |
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| |||||||||||||| ||||||||| || | ||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27532320 |
tattgatttcatgatacaatttatgagtcgatttattcattaaacattctaactcgacagatcctgatatgcttgaggttggaaatggagggatgacaaa |
27532419 |
T |
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| Q |
406 |
aaatgaatatattgttcacttcagtttgtgggccatttcaaaggttctatcattctc |
462 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||| || |||||| |
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| T |
27532420 |
aaatgagtatatcgttcacttcagtttgtgggccatttcaaaggttcgattattctc |
27532476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0279 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 371 - 472
Target Start/End: Original strand, 20606 - 20712
Alignment:
| Q |
371 |
gacatgcttgagg-ttggaaatggagggatgac--aaaaaatgaatatattgttca-cttcagtttgtgggcc-atttcaaaggttctatcattctcttg |
465 |
Q |
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||||||||||||| |||||||||| ||| ||| |||||| | |||||||||||| |||||||||||||||| || ||||||||||||||||||||| | |
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| T |
20606 |
gacatgcttgagggttggaaatggggggcagaccaaaaaaagggatatattgttcaacttcagtttgtgggcccatgtcaaaggttctatcattctctgg |
20705 |
T |
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| Q |
466 |
tcttcat |
472 |
Q |
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||||||| |
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| T |
20706 |
tcttcat |
20712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 404
Target Start/End: Original strand, 24883685 - 24883727
Alignment:
| Q |
362 |
acagatcctgacatgcttgaggttggaaatggagggatgacaa |
404 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
24883685 |
acagatcctgacatgcttgaagttggaaatggaggtatgacaa |
24883727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 32590259 - 32590219
Alignment:
| Q |
364 |
agatcctgacatgcttgaggttggaaatggagggatgacaa |
404 |
Q |
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||||||||| |||||||| |||||||||||||| ||||||| |
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| T |
32590259 |
agatcctgatatgcttgaagttggaaatggaggcatgacaa |
32590219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 32600707 - 32600667
Alignment:
| Q |
364 |
agatcctgacatgcttgaggttggaaatggagggatgacaa |
404 |
Q |
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||||||||| |||||||| |||||||||||||| ||||||| |
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| T |
32600707 |
agatcctgatatgcttgaagttggaaatggaggcatgacaa |
32600667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 34593853 - 34593815
Alignment:
| Q |
364 |
agatcctgacatgcttgaggttggaaatggagggatgac |
402 |
Q |
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|||||||||||||||||||||||| |||||||| ||||| |
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| T |
34593853 |
agatcctgacatgcttgaggttgggaatggaggcatgac |
34593815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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