View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10215_low_13 (Length: 248)
Name: NF10215_low_13
Description: NF10215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10215_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 3827531 - 3827764
Alignment:
| Q |
1 |
attgatctttatttcctttaatatgaaatcaagtgcaagaaggcctttaacacatggcctcaaagttagggggactcaaatttgcaaaaaataaacttct |
100 |
Q |
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| T |
3827531 |
attgatctttatttcctttaatatgaaatcaagtgcaagaaggcctttaacacatggcctcaaagttagggggactcaaatttgcaaaaaataaacttct |
3827630 |
T |
|
| Q |
101 |
acctgcagacaaaatcattcactagatgtcatttgtctataggtaaaatcatgtaagacaacaattttgttgtcaattgtctataagtaaatgtctatgt |
200 |
Q |
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| T |
3827631 |
acctgcggacaaaatcattcactagatgtcatttgtctataggtaaaatcatgtaagacaacaattttgttgtcaattgtctataagtaaatgtctatgt |
3827730 |
T |
|
| Q |
201 |
gtgcttaggtaaaacttaagtttgaaccctaact |
234 |
Q |
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| T |
3827731 |
gtgcttaggtaaaacttaagtttgaaccctaact |
3827764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 982958 - 983027
Alignment:
| Q |
109 |
acaaaatcattcactagatgtcatttgtctataggtaaaatcatgtaagacaacaattttgttgtcaatt |
178 |
Q |
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| T |
982958 |
acaaaatccgtcactaaatgtcatttttctataggtaaaattatgaaagacaataattttgcagtcaatt |
983027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 11673571 - 11673500
Alignment:
| Q |
106 |
cagacaaaatcattcactagatgtcatttgtctataggtaaaatcatgtaagacaacaattttgttgtcaatt |
178 |
Q |
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| T |
11673571 |
cagacaaaatctgtcactaaatgtcatttttctataggtaaaa-gttgaaagacatcaattttgctgtcaatt |
11673500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 41067753 - 41067720
Alignment:
| Q |
58 |
cctcaaagttagggggactcaaatttgcaaaaaa |
91 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
41067753 |
cctcaaagttagggggactcaaatttgaaaaaaa |
41067720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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