View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10215_low_4 (Length: 405)
Name: NF10215_low_4
Description: NF10215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10215_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 23)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 23408610 - 23408821
Alignment:
| Q |
23 |
caggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctc |
122 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408610 |
caggaagaacaagtctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctc |
23408709 |
T |
|
| Q |
123 |
gaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttg |
222 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
23408710 |
gaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttg |
23408809 |
T |
|
| Q |
223 |
tatgtttctaca |
234 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23408810 |
tatgtttctaca |
23408821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 23868940 - 23868733
Alignment:
| Q |
23 |
caggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctc |
122 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23868940 |
caggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctc |
23868841 |
T |
|
| Q |
123 |
gaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttg |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||| |
|
|
| T |
23868840 |
gaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttg |
23868741 |
T |
|
| Q |
223 |
tatgtttc |
230 |
Q |
| |
|
|||||||| |
|
|
| T |
23868740 |
tatgtttc |
23868733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 23402282 - 23402071
Alignment:
| Q |
23 |
caggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctc |
122 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23402282 |
caggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctc |
23402183 |
T |
|
| Q |
123 |
gaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttg |
222 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||| |
|
|
| T |
23402182 |
gaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttg |
23402083 |
T |
|
| Q |
223 |
tatgtttctaca |
234 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23402082 |
tatgtttctaca |
23402071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 23415779 - 23415986
Alignment:
| Q |
23 |
caggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415779 |
caggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctc |
23415878 |
T |
|
| Q |
123 |
gaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttg |
222 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||| |
|
|
| T |
23415879 |
gaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttg |
23415978 |
T |
|
| Q |
223 |
tatgtttc |
230 |
Q |
| |
|
|||||||| |
|
|
| T |
23415979 |
tatgtttc |
23415986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 23453442 - 23453653
Alignment:
| Q |
23 |
caggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctc |
122 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453442 |
caggaagaacaagactgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctc |
23453541 |
T |
|
| Q |
123 |
gaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttg |
222 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||| |
|
|
| T |
23453542 |
gaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttg |
23453641 |
T |
|
| Q |
223 |
tatgtttctaca |
234 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23453642 |
tatgtttctaca |
23453653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 24307431 - 24307224
Alignment:
| Q |
23 |
caggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctc |
122 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
24307431 |
caggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctc |
24307332 |
T |
|
| Q |
123 |
gaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||| |
|
|
| T |
24307331 |
gaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttg |
24307232 |
T |
|
| Q |
223 |
tatgtttc |
230 |
Q |
| |
|
|||||||| |
|
|
| T |
24307231 |
tatgtttc |
24307224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 23886035 - 23885828
Alignment:
| Q |
23 |
caggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctc |
122 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23886035 |
caggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctc |
23885936 |
T |
|
| Q |
123 |
gaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttg |
222 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||| |
|
|
| T |
23885935 |
gaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttg |
23885836 |
T |
|
| Q |
223 |
tatgtttc |
230 |
Q |
| |
|
|||||||| |
|
|
| T |
23885835 |
tatgtttc |
23885828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 26832938 - 26832736
Alignment:
| Q |
28 |
agaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaaga |
127 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
26832938 |
agaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaaga |
26832839 |
T |
|
| Q |
128 |
tatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgt |
227 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
26832838 |
tatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgt |
26832739 |
T |
|
| Q |
228 |
ttc |
230 |
Q |
| |
|
||| |
|
|
| T |
26832738 |
ttc |
26832736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 26434227 - 26434025
Alignment:
| Q |
28 |
agaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaaga |
127 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
26434227 |
agaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaaga |
26434128 |
T |
|
| Q |
128 |
tatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgt |
227 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
26434127 |
tatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgt |
26434028 |
T |
|
| Q |
228 |
ttc |
230 |
Q |
| |
|
||| |
|
|
| T |
26434027 |
ttc |
26434025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 26436007 - 26435805
Alignment:
| Q |
28 |
agaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaaga |
127 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
26436007 |
agaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaaga |
26435908 |
T |
|
| Q |
128 |
tatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgt |
227 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
26435907 |
tatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgt |
26435808 |
T |
|
| Q |
228 |
ttc |
230 |
Q |
| |
|
||| |
|
|
| T |
26435807 |
ttc |
26435805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 34662111 - 34662318
Alignment:
| Q |
23 |
caggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctc |
122 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||| ||||| || || ||||||||||| || | ||||||||||| ||||||||||| |||||||| |
|
|
| T |
34662111 |
caggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctc |
34662210 |
T |
|
| Q |
123 |
gaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttg |
222 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
34662211 |
gaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttg |
34662310 |
T |
|
| Q |
223 |
tatgtttc |
230 |
Q |
| |
|
|| ||||| |
|
|
| T |
34662311 |
taggtttc |
34662318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 268 - 378
Target Start/End: Complemental strand, 24307186 - 24307076
Alignment:
| Q |
268 |
gcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtt |
367 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307186 |
gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt |
24307087 |
T |
|
| Q |
368 |
tcttctctgct |
378 |
Q |
| |
|
||||||||||| |
|
|
| T |
24307086 |
tcttctctgct |
24307076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 265 - 378
Target Start/End: Complemental strand, 26832701 - 26832588
Alignment:
| Q |
265 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
364 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26832701 |
ccggcggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26832602 |
T |
|
| Q |
365 |
gtttcttctctgct |
378 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26832601 |
gtttcttctctgct |
26832588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 274 - 374
Target Start/End: Complemental strand, 23402031 - 23401931
Alignment:
| Q |
274 |
gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23402031 |
gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct |
23401932 |
T |
|
| Q |
374 |
c |
374 |
Q |
| |
|
| |
|
|
| T |
23401931 |
c |
23401931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 265 - 378
Target Start/End: Complemental strand, 26433990 - 26433877
Alignment:
| Q |
265 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
364 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26433990 |
ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26433891 |
T |
|
| Q |
365 |
gtttcttctctgct |
378 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26433890 |
gtttcttctctgct |
26433877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 265 - 378
Target Start/End: Complemental strand, 26435770 - 26435657
Alignment:
| Q |
265 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
364 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26435770 |
ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26435671 |
T |
|
| Q |
365 |
gtttcttctctgct |
378 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26435670 |
gtttcttctctgct |
26435657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 274 - 374
Target Start/End: Original strand, 23408861 - 23408961
Alignment:
| Q |
274 |
gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23408861 |
gaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct |
23408960 |
T |
|
| Q |
374 |
c |
374 |
Q |
| |
|
| |
|
|
| T |
23408961 |
c |
23408961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 265 - 374
Target Start/End: Original strand, 23416018 - 23416127
Alignment:
| Q |
265 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || | |
|
|
| T |
23416018 |
ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctg |
23416117 |
T |
|
| Q |
365 |
gtttcttctc |
374 |
Q |
| |
|
|||||||||| |
|
|
| T |
23416118 |
gtttcttctc |
23416127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 23868698 - 23868589
Alignment:
| Q |
265 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
364 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868698 |
ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgg |
23868599 |
T |
|
| Q |
365 |
gtttcttctc |
374 |
Q |
| |
|
|||||||||| |
|
|
| T |
23868598 |
gtttcttctc |
23868589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 23451807 - 23451920
Alignment:
| Q |
28 |
agaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaaga |
127 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
23451807 |
agaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattcttgagcgagcttctcaaaga |
23451906 |
T |
|
| Q |
128 |
tatcattgatgaaa |
141 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
23451907 |
tatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 265 - 378
Target Start/End: Complemental strand, 23885793 - 23885680
Alignment:
| Q |
265 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
364 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
23885793 |
ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctg |
23885694 |
T |
|
| Q |
365 |
gtttcttctctgct |
378 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
23885693 |
gtttcttctctgct |
23885680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 271 - 375
Target Start/End: Original strand, 34662359 - 34662463
Alignment:
| Q |
271 |
gctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttct |
370 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
34662359 |
gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttct |
34662458 |
T |
|
| Q |
371 |
tctct |
375 |
Q |
| |
|
||||| |
|
|
| T |
34662459 |
tctct |
34662463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 277 - 374
Target Start/End: Original strand, 23453696 - 23453793
Alignment:
| Q |
277 |
ccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttctc |
374 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
23453696 |
ccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttcttctc |
23453793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 43 - 230
Target Start/End: Complemental strand, 41670588 - 41670401
Alignment:
| Q |
43 |
gcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaac |
142 |
Q |
| |
|
|||||||| || |||| ||||||||||| |||||||||||||| | ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| | |
|
|
| T |
41670588 |
gcagtctgtatctcccgagaagtgattgtaggcttcttgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagc |
41670489 |
T |
|
| Q |
143 |
tgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
230 |
Q |
| |
|
||||||| || ||||| || |||||||||||||||||||| || ||||| || || || || ||||| |||||||||||||| ||||| |
|
|
| T |
41670488 |
tgttcatgatccccatagccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttc |
41670401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 40795957 - 40795767
Alignment:
| Q |
43 |
gcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaac |
142 |
Q |
| |
|
||||||||||| || | || ||||| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
40795957 |
gcagtctgaatctcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaac |
40795858 |
T |
|
| Q |
143 |
tgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctac |
233 |
Q |
| |
|
||||||| || ||||| || ||||| ||||| |||||||| || ||||| || || || || ||||| |||||||||||||| |||||||| |
|
|
| T |
40795857 |
tgttcatgatccccatagccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac |
40795767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 33216650 - 33216594
Alignment:
| Q |
26 |
gaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgt |
82 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
33216650 |
gaagaacaagtctgacagcagtttgaattttccttgaagtgattgttggcttcttgt |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 230
Target Start/End: Complemental strand, 29391621 - 29391467
Alignment:
| Q |
76 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatac |
175 |
Q |
| |
|
||||||||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| |||||| || |||| |
|
|
| T |
29391621 |
ttcttgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatac |
29391522 |
T |
|
| Q |
176 |
caatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
230 |
Q |
| |
|
| || || || ||||| ||||| || || ||||| ||||| ||||| || ||||| |
|
|
| T |
29391521 |
ctatatcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc |
29391467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
| Q |
102 |
tgattcttgagcaagcttctcgaagatatcattgatg |
138 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33216594 |
tgattcttgagcaagcttcacgaagatatcattgatg |
33216558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 40180340 - 40180547
Alignment:
| Q |
23 |
caggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctc |
122 |
Q |
| |
|
|||||||||| | ||| || ||||| ||||| ||||| ||||| || || ||||||||||| || | ||| | | || ||||| ||||| || ||||| |
|
|
| T |
40180340 |
caggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctagccaaacgagacgattcctgagcgagtttctc |
40180439 |
T |
|
| Q |
123 |
gaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttg |
222 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||| || |||||||| | ||| || || || ||||| |||||||| || ||||| ||||| |||||| |
|
|
| T |
40180440 |
aaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagatgtatatcttg |
40180539 |
T |
|
| Q |
223 |
tatgtttc |
230 |
Q |
| |
|
|| ||||| |
|
|
| T |
40180540 |
taggtttc |
40180547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 47317490 - 47317431
Alignment:
| Q |
23 |
caggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgt |
82 |
Q |
| |
|
||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47317490 |
caggaagaataagtctgacaacagtttgaatttcccttgaagtgattgttggcttcttgt |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
| Q |
102 |
tgattcttgagcaagcttctcgaagatatcattgatg |
138 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47317431 |
tgattcttgagcaagcttcacgaagatatcattgatg |
47317395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
| Q |
105 |
ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtact |
204 |
Q |
| |
|
||||||||| || |||| |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| || || |
|
|
| T |
29684826 |
ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc |
29684727 |
T |
|
| Q |
205 |
ttgaatatgtagatcttgtatgtttc |
230 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
29684726 |
ttgaatatatatatcttgtaggtttc |
29684701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 14715420 - 14715372
Alignment:
| Q |
326 |
gagctttctcggcgacggtggacttcttctcctctgcgggtttcttctc |
374 |
Q |
| |
|
|||||||||| |||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
14715420 |
gagctttctcctcgacagtgtatttcttctcctctgcgggtttcttctc |
14715372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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