View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10215_low_5 (Length: 369)

Name: NF10215_low_5
Description: NF10215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10215_low_5
NF10215_low_5
[»] chr1 (1 HSPs)
chr1 (18-366)||(18027904-18028253)
[»] chr8 (1 HSPs)
chr8 (30-97)||(15222700-15222767)
[»] chr5 (1 HSPs)
chr5 (84-136)||(24491273-24491325)
[»] chr2 (4 HSPs)
chr2 (71-154)||(22623513-22623596)
chr2 (63-98)||(36563037-36563072)
chr2 (60-129)||(13534157-13534226)
chr2 (253-309)||(21965998-21966054)
[»] scaffold0003 (1 HSPs)
scaffold0003 (233-309)||(223469-223545)
[»] chr6 (1 HSPs)
chr6 (67-156)||(12150073-12150162)
[»] chr4 (1 HSPs)
chr4 (76-108)||(223704-223736)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 18028253 - 18027904
Alignment:
Q  18 attcttattgccaatgaattagtggtggatgcttggaggctaaagaaagaattaattctttttaaagttgattttgagaaaacatatgattgagttcatt 117  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18028253 attcttattgccaatgaattagtggtggatgctcggatgctaaagaaagaattaattctttttaaagttgattttgagaaagcatatgattgagttcatt 18028154  T
Q  118 tgaggtatttggaagagatcatggttaaaatgaattttcatccgctttggcataagtaaattttagaatgtggtacaactgcaacaacgtcggtccttgt 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18028153 tgaggtatttggaagagatcatggttaaaatgaattttcacccgctttggcataagtaaattttagaatgtggtacaactgcaacaatgtcggtccttgt 18028054  T
Q  218 caatgggagccaaattgatgaatttaagctgagatgaggtcttcgtcaaggggaccctctttctta-tttcttgtttcttttagctgctgaagagttaaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | ||| |||||||||||||||||||||| ||||||    
T  18028053 caatgggagccaaattgatgaatttaagctgagatgaggtcttcgccaaggggaccatctttctcatttttttgtttcttttagctgctgaagggttaaa 18027954  T
Q  317 tgtcatacacaagtaggtgtgccagtttcacatttatagttcgttgatga 366  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  18027953 tgtcatacacaagcaggtgtgtcagtttcacatttatagttcgttgatga 18027904  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 15222700 - 15222767
Alignment:
Q  30 aatgaattagtggtggatgcttggaggctaaagaaagaattaattctttttaaagttgattttgagaa 97  Q
    ||||| |||||||  |||||||| ||| | |||||||||||||||||||||||  |||||||||||||    
T  15222700 aatgagttagtggatgatgcttgtaggttgaagaaagaattaattctttttaagattgattttgagaa 15222767  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 24491325 - 24491273
Alignment:
Q  84 gttgattttgagaaaacatatgattgagttcatttgaggtatttggaagagat 136  Q
    |||||||||||||||||||||||||  ||  |||||||||| |||||||||||    
T  24491325 gttgattttgagaaaacatatgattcggtatatttgaggtacttggaagagat 24491273  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 22623596 - 22623513
Alignment:
Q  71 aattctttttaaagttgattttgagaaaacatatgattgagttcatttgaggtatttggaagagatcatggttaaaatgaattt 154  Q
    ||||||||||||||| |||||||||||||| |||||||  ||| | |||| ||||||| ||||  | | |||||||| ||||||    
T  22623596 aattctttttaaagtcgattttgagaaaacttatgattcggttgacttgatgtatttgaaagatgtgagggttaaaacgaattt 22623513  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 98
Target Start/End: Original strand, 36563037 - 36563072
Alignment:
Q  63 aaagaattaattctttttaaagttgattttgagaaa 98  Q
    ||||||||||||||||||||| ||||||||||||||    
T  36563037 aaagaattaattctttttaaaattgattttgagaaa 36563072  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 13534226 - 13534157
Alignment:
Q  60 aagaaagaattaattctttttaaagttgattttgagaaaacatatgattgagttcatttgaggtatttgg 129  Q
    ||||||||| | ||||||||||| ||||||||  | ||||| ||||| | |||||||| |||||||||||    
T  13534226 aagaaagaacttattctttttaaggttgatttcaaaaaaacctatgactcagttcattggaggtatttgg 13534157  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 21966054 - 21965998
Alignment:
Q  253 gaggtcttcgtcaaggggaccctctttcttatttcttgtttcttttagctgctgaag 309  Q
    ||||||||||||||||||| ||||||||   |||  ||||||| |||||||||||||    
T  21966054 gaggtcttcgtcaaggggatcctctttccccttttctgtttctgttagctgctgaag 21965998  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 223469 - 223545
Alignment:
Q  233 tgatgaatttaagct-gagatgaggtcttcgtcaaggggaccctctttcttatttcttgtttcttttagctgctgaag 309  Q
    |||||| |||||||| |||| |||| |||||||||||||| |||||||||   || |||||||| |||||||||||||    
T  223469 tgatgagtttaagcttgaga-gaggccttcgtcaaggggatcctctttctccgtttttgtttctgttagctgctgaag 223545  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 12150073 - 12150162
Alignment:
Q  67 aattaattctttttaaagttgattttgagaaaacatatgattgagttcatttgaggtatttggaagagatcatggttaaaatgaattttc 156  Q
    ||||| |||| ||||| ||||||||||| ||| |||| |||| |||| | | ||||||||| |||||| | |||  ||||||||||||||    
T  12150073 aattacttctgtttaaggttgattttgaaaaagcatacgattaagttgactggaggtatttagaagaggttatgagtaaaatgaattttc 12150162  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 223704 - 223736
Alignment:
Q  76 tttttaaagttgattttgagaaaacatatgatt 108  Q
    ||||||||||||||||||||||||||| |||||    
T  223704 tttttaaagttgattttgagaaaacatttgatt 223736  T

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