View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10216_high_2 (Length: 370)
Name: NF10216_high_2
Description: NF10216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10216_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 12064173 - 12063828
Alignment:
| Q |
1 |
gttgtttttcagctgtatgataacagcttttctggtcaaattcctgctggatttggtaaaatggaaaatctcacaggtttttcggtttacagaaacagtt |
100 |
Q |
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| T |
12064173 |
gttgtttttcagctgtatgataacagcttttctggtcaaattcctgctggatttggtaaaatggaaaatctcacaggtttttcggtttacagaaacagtt |
12064074 |
T |
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| Q |
101 |
tcaacggtacaattccggagaattttggccgattttctccgctcaaaagtatcgacatatcagagaatcaattttcaggttttttcccaaagtacttatg |
200 |
Q |
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| T |
12064073 |
tcaacggtacaattccggaggattttggccgattttctccgctcaaaagtatcgacatatcagagaatcaattttcaggttttttcccaaagtacttatg |
12063974 |
T |
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| Q |
201 |
tgagaaaagaaagttaacacttttgcttgcattgcaaaacaatttctctggaaatttttccgagtcttacgcttcatgcaagtcactagaaagattaaga |
300 |
Q |
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| T |
12063973 |
tgagaaaagaaagttaacacttttgcttgcattgcaaaacaatttctctggaaatttttctgagtcttatgcttcatgcaagtcactagaaagattaagg |
12063874 |
T |
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| Q |
301 |
atcagtaataattctttgtttggaaaagttccaaaaggtgtttggt |
346 |
Q |
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||||||||||||||||||| ||||||| |||| ||||||||||||| |
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| T |
12063873 |
atcagtaataattctttgtctggaaaaattccgaaaggtgtttggt |
12063828 |
T |
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