View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10216_high_3 (Length: 340)
Name: NF10216_high_3
Description: NF10216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10216_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 37767682 - 37767988
Alignment:
| Q |
17 |
acatcataaatttgcatattcatcacgaccagaccagaccaactatatatcatcagatccaataacaacattcaaattggttcaatctctctgcaaagga |
116 |
Q |
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| T |
37767682 |
acatcataaatttgcatattcatcacgaccagaccagaccaactatatatcatcagatccaataacaacattcaaattggttcaatctc--tgcaaagga |
37767779 |
T |
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| Q |
117 |
tccatgcatactcatttaaaagaacttagatttagtatataatatataccttccgaggtttaacttctcatccaaaagcatggatgcgacgaaagctaca |
216 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37767780 |
tccatgcatactcatttaaatgaacttagatttagtatataatatataccttccgaggtttaacttctcatccaagagcatggatgcgacgaaagctaca |
37767879 |
T |
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| Q |
217 |
atcaaaagcattagagggttgaaagcagacgcatataaaggtcctttcttctgtacgacccatgccatgacaaaaatcattattccagatgcaaaaactc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37767880 |
atcaaaagcattagagggttgaaagcagacgcatataaaggtcctttcttctgtacgacccatgccatgacaaaaatcattattccagatgcaaaaactc |
37767979 |
T |
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| Q |
317 |
ccttcaaat |
325 |
Q |
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||||||||| |
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| T |
37767980 |
ccttcaaat |
37767988 |
T |
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