View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10216_high_4 (Length: 317)
Name: NF10216_high_4
Description: NF10216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10216_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 91 - 301
Target Start/End: Complemental strand, 10648007 - 10647791
Alignment:
| Q |
91 |
tagtattttatcttgttcatacgaaatatcatgtcttattacgacaaggaaatgaaaatgatgtgtctaataaagaaataaaaaacttgacacatgtt-- |
188 |
Q |
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| T |
10648007 |
tagtattttatcttgaccataacaaatgtcatgtctaattacgacaaggaaatgaaaaggatgtgtcgaataaagaaacaaaaaacttgacacatgttga |
10647908 |
T |
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| Q |
189 |
----tgttctaagtgataaggaactaatgaatatcttaaatagtacgttgttagatattttaaacacactctaagaatattcccataaaatgaatataag |
284 |
Q |
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| T |
10647907 |
tgtttgttctaagtgataaggaactaatgaatatcttaaatagtacgttgttagatattttaaacaaactctaagaatattcccacaaattgattatggg |
10647808 |
T |
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| Q |
285 |
gttttgagtatgtttag |
301 |
Q |
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| T |
10647807 |
gttttgagtatgtttag |
10647791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 10648361 - 10648273
Alignment:
| Q |
1 |
attaatcccgcggtttctgctacaatgaatttaaaactcatttaacatttattaaaatattcaccatccaatataacagcactagttat |
89 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10648361 |
attaatcccgcggtttctgctacaatgaatttaaaactcatttaacatttattaaaatattcaccatcgaatataacagcactagttat |
10648273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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