View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10216_low_11 (Length: 265)
Name: NF10216_low_11
Description: NF10216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10216_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 104 - 249
Target Start/End: Original strand, 18542369 - 18542515
Alignment:
| Q |
104 |
atcaaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaat |
202 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18542369 |
atcaaataataaaataggttggggatatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacgaaatcaagggccttcatgaaat |
18542468 |
T |
|
| Q |
203 |
ccagatgaatgaatgtgtctattcctttccattaagtatgtaaaata |
249 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18542469 |
ccagatgaatgaatgtgtctattcctttctattaagtatgtaaaata |
18542515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 107 - 249
Target Start/End: Original strand, 18555430 - 18555573
Alignment:
| Q |
107 |
aaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaatcca |
205 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18555430 |
aaataataaaataggttggggatatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaagggaatcaagggccttcatgaaatcca |
18555529 |
T |
|
| Q |
206 |
gatgaatgaatgtgtctattcctttccattaagtatgtaaaata |
249 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18555530 |
gatgaatgaacgtgtctattcctttccattaagtatgtaaaata |
18555573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 107 - 249
Target Start/End: Original strand, 18550452 - 18550595
Alignment:
| Q |
107 |
aaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaatcca |
205 |
Q |
| |
|
||||||||| || ||||||| |||||||||||||| || |||||||| | ||||||||||||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
18550452 |
aaataataatattggttggggatatttgaaaaattagggaggttacaattgtgacataagtagcaaaagtgaagggaatcaagagcctccatgaaatcca |
18550551 |
T |
|
| Q |
206 |
gatgaatgaatgtgtctattcctttccattaagtatgtaaaata |
249 |
Q |
| |
|
||||||||||||||||||||| || |||| ||| |||||||||| |
|
|
| T |
18550552 |
gatgaatgaatgtgtctattcattcccataaagcatgtaaaata |
18550595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 18542281 - 18542350
Alignment:
| Q |
4 |
agtgaaggaggtgcacaaggtggaggtggacaaatcgaaggtggaaacgataaagaaagtgaacttgatg |
73 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18542281 |
agtgaaggaggtgcacaaggtggaggtgaacaaatcgaaggtggaaacgataaagaaagtgaacttgatg |
18542350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 18550361 - 18550430
Alignment:
| Q |
5 |
gtgaaggaggtgcacaaggtggaggtggacaaatcgaaggtggaaacgataaagaaagtgaacttgatgc |
74 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||| ||||||||| |
|
|
| T |
18550361 |
gtgaaggaggtgcgcaaggtggaggtggacaaatcgaaggtggaaaagacaaaggaagtggacttgatgc |
18550430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 18555339 - 18555408
Alignment:
| Q |
5 |
gtgaaggaggtgcacaaggtggaggtggacaaatcgaaggtggaaacgataaagaaagtgaacttgatgc |
74 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| ||||||||| |
|
|
| T |
18555339 |
gtgaaggaggtgcacaaggtggaggtagaaaaatcagaggtggaagtgacaaagaaagtggacttgatgc |
18555408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University