View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10216_low_2 (Length: 459)
Name: NF10216_low_2
Description: NF10216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10216_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 8435564 - 8435136
Alignment:
| Q |
18 |
gttataaccttgtcctgataaacagatcaaggaaaaatatagattagtatgacttgtcaaattgattgaacagtttgtggcattgaaattgagtagctca |
117 |
Q |
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| T |
8435564 |
gttataaccttgtcctgataaacagatcaagggaaaatacagattagtatgacttgtcaaattgattgaacagtttgtggcattgaaattgagtagctca |
8435465 |
T |
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| Q |
118 |
tcaaacatacattgataaaaatttaactttgtttatgatatccatcaagcattaattaatttcgagcttataaacatatactcagtttaaaaaatataag |
217 |
Q |
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| T |
8435464 |
tcaaacatacattgataaaaatttaactttgtttatgatatccatcaagcattaattaatttcgagcttataaaattatactcagtttaaaaaatataag |
8435365 |
T |
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| Q |
218 |
atgccaatagaggacaattagaggcatgtccaaaataagagatagaaatagttgaactatatgagaccgtaccgacacatttgtagagacagatcaacac |
317 |
Q |
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| T |
8435364 |
atgccaatagaggacaattagagacatgtccaaaataagagatagaaatagttgaactatatgagaccgtaccgacacatttgaagagacagatcaagac |
8435265 |
T |
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| Q |
318 |
ggttttgtcacaaaccaaaggccgaaaatgatagcaatattatataattctaatggtaaatttgtcgatgatctaaaaatgtgacgctgcaatgaaaatt |
417 |
Q |
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| T |
8435264 |
ggttttgtcacaaaccaaaggccgaaaatgatagcaatattatataattctaatggtaactttgtcgatgatctaaaaatgtg--gctgcaatgaaaatt |
8435167 |
T |
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| Q |
418 |
aaacgaagaaactgtagtgtctctatctctg |
448 |
Q |
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| T |
8435166 |
aaacgaagaaactgtaatgtctctatctctg |
8435136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 8369710 - 8369646
Alignment:
| Q |
76 |
aaattgattgaacagtttgtggcattgaaattgagtagctcatcaaacatacattgataaaaattt |
141 |
Q |
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| T |
8369710 |
aaattgattgaaca-tatgtggcattgacatttaatagctcatcaaacatgctttgatcaaaattt |
8369646 |
T |
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