View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10216_low_8 (Length: 301)

Name: NF10216_low_8
Description: NF10216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10216_low_8
NF10216_low_8
[»] chr8 (11 HSPs)
chr8 (46-179)||(13033076-13033209)
chr8 (177-287)||(13033286-13033396)
chr8 (46-178)||(15214904-15215036)
chr8 (177-278)||(15214728-15214826)
chr8 (46-176)||(15066407-15066537)
chr8 (181-278)||(15052419-15052513)
chr8 (177-258)||(15066617-15066695)
chr8 (15-47)||(15066355-15066387)
chr8 (15-47)||(15076308-15076340)
chr8 (46-80)||(15076360-15076394)
chr8 (15-47)||(15052150-15052182)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 46 - 179
Target Start/End: Original strand, 13033076 - 13033209
Alignment:
Q  46 aacctaatcttgtcacttcctagagaaaatgggtgtgagactgaatatatgtannnnnnncatggattttggtgtccatcatatcttatccaatctgtca 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  13033076 aacctaatcttgtcacttcctagagaaaatgggtgtgagactgaatatatgtatttttttcatggattttggtgtccatcatatcttatccaatctgtca 13033175  T
Q  146 acacttttcaaaataaatttcatgccaaagacaa 179  Q
    ||||||||||||||||||||||||||||||||||    
T  13033176 acacttttcaaaataaatttcatgccaaagacaa 13033209  T

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Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 13033286 - 13033396
Alignment:
Q  177 caacattttacctccttagagaataataaccatccattactattatttaatccacatgaactggtgcctctgtttgaagtaaacctttatggtggtaaag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  13033286 caacattttacctccttagagaataataaccatccattactattatttaatccacatgaactagtgcctctgtttgaggtaaacctttatggtggtaaag 13033385  T
Q  277 atattcttttg 287  Q
    | |||||||||    
T  13033386 acattcttttg 13033396  T

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Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 15215036 - 15214904
Alignment:
Q  46 aacctaatcttgtcacttcctagagaaaatgggtgtgagactgaatatatgtannnnnnncatggattttggtgtccatcatatcttatccaatctgtca 145  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||       |||||||||||||||||||||  |||||| |||||||| |    
T  15215036 aacctaatcttgtcacttcctagagaaaatgggtgtgagactcaatatatgtatttttttcatggattttggtgtccatcaactcttattcaatctgtga 15214937  T
Q  146 acacttttcaaaataaatttcatgccaaagaca 178  Q
    || ||||||||||||| |||||||| |||||||    
T  15214936 actcttttcaaaataattttcatgctaaagaca 15214904  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 177 - 278
Target Start/End: Complemental strand, 15214826 - 15214728
Alignment:
Q  177 caacattttacctccttagagaataataaccatccattactattatttaatccacatgaactggtgcctctgtttgaagtaaacctttatggtggtaaag 276  Q
    ||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  15214826 caacattttacatccttagagaataa---ccatccattactattatttaatccacatgaacttgtgcctcagtttgaagtaaacctttatggtgataaag 15214730  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 15066407 - 15066537
Alignment:
Q  46 aacctaatcttgtcacttcctagagaaaatgggtgtgagactgaatatatgtannnnnnncatggattttggtgtccatcatatcttatccaatctgtca 145  Q
    |||||||||||||| ||||||||||||||||| ||||| ||| ||||| | ||       |||||||||||||||||||||  ||||||||||||||| |    
T  15066407 aacctaatcttgtctcttcctagagaaaatggatgtgatactcaatatttttatttttatcatggattttggtgtccatcaactcttatccaatctgtga 15066506  T
Q  146 acacttttcaaaataaatttcatgccaaaga 176  Q
    || ||||||||||||| ||||||||||||||    
T  15066507 actcttttcaaaataattttcatgccaaaga 15066537  T

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Target: chr8; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 181 - 278
Target Start/End: Original strand, 15052419 - 15052513
Alignment:
Q  181 attttacctccttagagaataataaccatccattactattatttaatccacatgaactggtgcctctgtttgaagtaaacctttatggtggtaaagat 278  Q
    ||||||| ||||||||||||||    |||||||||||||||| ||||||||||||||| ||||||| |||||||| || |||||||||||| ||||||    
T  15052419 attttacttccttagagaataag---catccattactattatctaatccacatgaactagtgcctcagtttgaagcaagcctttatggtggcaaagat 15052513  T

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Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 15066617 - 15066695
Alignment:
Q  177 caacattttacctccttagagaataataaccatccattactattatttaatccacatgaactggtgcctctgtttgaagtaa 258  Q
    |||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||| |||||||  ||||||||||    
T  15066617 caacattttacctccttagagaata---accatccattactatcatttaatccacatgaacttgtgcctcattttgaagtaa 15066695  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 15066355 - 15066387
Alignment:
Q  15 ggatggacaagaaacaattagcgaagaaaacaa 47  Q
    |||||||||||||||||||||||||||||||||    
T  15066355 ggatggacaagaaacaattagcgaagaaaacaa 15066387  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 15076308 - 15076340
Alignment:
Q  15 ggatggacaagaaacaattagcgaagaaaacaa 47  Q
    |||||||||||||||||||||||||||||||||    
T  15076308 ggatggacaagaaacaattagcgaagaaaacaa 15076340  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 15076360 - 15076394
Alignment:
Q  46 aacctaatcttgtcacttcctagagaaaatgggtg 80  Q
    |||||||||||||||||||||| ||||||||||||    
T  15076360 aacctaatcttgtcacttcctaaagaaaatgggtg 15076394  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 15052150 - 15052182
Alignment:
Q  15 ggatggacaagaaacaattagcgaagaaaacaa 47  Q
    |||||||||||||| ||||||||||||||||||    
T  15052150 ggatggacaagaaaaaattagcgaagaaaacaa 15052182  T

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