View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10216_low_9 (Length: 300)
Name: NF10216_low_9
Description: NF10216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10216_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 42929865 - 42929751
Alignment:
| Q |
19 |
tcaacttcatcttcacaatcaatctcctccctaacttgttctaacaacaaagaagaactaggagtatcaacctcttcctcgcgagcttccgaacaagaga |
118 |
Q |
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| T |
42929865 |
tcaacttcatcttcacaatcaatctcctccctaacttgttctaacaacaaagaagaactaggagtatcaacctcttcctcgcgagcttccgaacaagaaa |
42929766 |
T |
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| Q |
119 |
cacaacgagtgctat |
133 |
Q |
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| T |
42929765 |
cacaacgagtgctat |
42929751 |
T |
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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 42929654 - 42929601
Alignment:
| Q |
230 |
caaatgtaagaccaaccaataaatcaacaaaagcaccaacaatatagccatgat |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929654 |
caaatgtaagaccaaccaataaatcaacaaaagcaccaacaatatagccatgat |
42929601 |
T |
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