View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10217_high_1 (Length: 385)
Name: NF10217_high_1
Description: NF10217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10217_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 374
Target Start/End: Complemental strand, 1006510 - 1006147
Alignment:
| Q |
9 |
ctaaaccccacctttgaccaaacactccactttaccctcttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaatgccctaca |
108 |
Q |
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| T |
1006510 |
ctaaaccccacctttgaccaaacactccactttaccctcttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaatgccctaca |
1006411 |
T |
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| Q |
109 |
ataaagtcttcgaaattctgnnnnnnnnntaatcttaaaattaaacctcggaaaaggaatagccacaaatttaagttaccatgaacaaatatgcattttt |
208 |
Q |
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| T |
1006410 |
ataaagtcttcgaaattctgaaaaaaaa-taatcttaaaattaaacctcggaaaaggaatagccacaaatttaagttaccatgaacaaatatgcattttt |
1006312 |
T |
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| Q |
209 |
tctcttaaacaaacttgcaaaaccattatctgtttttctattttgaactctgccattctcacactaagtgacattgacttatcatgagagtttcattatt |
308 |
Q |
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| T |
1006311 |
tctcttaaacaaacttgcaaaaccactatctgtttttctattttgaactctgccattctcacactaagtgacattgacttatcatgagagtttcattatt |
1006212 |
T |
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| Q |
309 |
ttgttgaattttggtttcattaataagcgtagatttatttattgctcttctaacctggatattctt |
374 |
Q |
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| T |
1006211 |
ttgttgaattttggtttcattaataagcgtagatttatttattgctcttctaacct-gatattctt |
1006147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 52474669 - 52474553
Alignment:
| Q |
12 |
aaccccacctttgaccaaacactccactttaccctcttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaatgccctacaata |
111 |
Q |
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| T |
52474669 |
aaccccacctttgaccaaacatcccacttgagcaccttcaatgtatgcattgcctgccaccataatttcatgaacacggctgatgaaatgccccacaaca |
52474570 |
T |
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| Q |
112 |
aagtcttcgaaattctg |
128 |
Q |
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| T |
52474569 |
aaatctttgaaattctg |
52474553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 38792137 - 38792190
Alignment:
| Q |
75 |
aatatcatgagcacggttgatgaaatgccctacaataaagtcttcgaaattctg |
128 |
Q |
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| T |
38792137 |
aatatcatgagcacggctgacgaaatgctccacaacaaagtcctcgaaattctg |
38792190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 21123631 - 21123679
Alignment:
| Q |
287 |
ttatcatgagagtttcattattttgttgaattttggtttcattaataag |
335 |
Q |
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| T |
21123631 |
ttatcatgtcagttgcattattttgttgaattttggttgcactaataag |
21123679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 5838290 - 5838371
Alignment:
| Q |
47 |
cttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaatgccctacaataaagtcttcgaaattctg |
128 |
Q |
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| T |
5838290 |
cttccatgtatgccttgcatgcccctagaatatcatgagctcggacgaggaaatgccccactataaaatcctcaaaattctg |
5838371 |
T |
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