View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10217_low_1 (Length: 418)
Name: NF10217_low_1
Description: NF10217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10217_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 28065372 - 28065007
Alignment:
| Q |
1 |
cacgtgatttatcaaataaataagggatgtttgtgcatagtgnnnnnnntaaaagggatgtttctttcatttacataaatttcaggggaggtccatgaaa |
100 |
Q |
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| T |
28065372 |
cacgtgatttatcaaataaataagggaggtttgtgcatattgaaaaaaataaaggggatgtttctttcatttacataaatttcaggggaggtccatgaaa |
28065273 |
T |
|
| Q |
101 |
ctttctcaaaaaattacattaaaagttgtactttcacttgcgtatttttcctaatcatgttttagtgcccctttttgttccatatataatcattttgggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28065272 |
ctttctcaaaaaattacattaaaagttgtactttcacttgcgtatttttcctaatcatgttttagtgcccctttttgttccatatataatcactttgggt |
28065173 |
T |
|
| Q |
201 |
tgaccctttaaaaaacattacttttagcctacccttatgttcaaaatctcactacacacataagattttaccctatactcttacattatcgctataaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
28065172 |
tgaccctttaaaaaacattacttttagcctacccttatgttcaaaatctcactacacacataagattttaccctatactcttgcattatccctataaacc |
28065073 |
T |
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| Q |
301 |
ataaaaatttcaattttatccattttgtaaattgacttcaccccacaatatttccaatatataaaa |
366 |
Q |
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| T |
28065072 |
ataaaaatttcaattttatccattttgtaaattgacttcaccccacaatatttccaatatataaaa |
28065007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 29740279 - 29740241
Alignment:
| Q |
4 |
gtgatttatcaaataaataagggatgtttgtgcatagtg |
42 |
Q |
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| T |
29740279 |
gtgatttatcaaataaataagggaggtttgtgcatagtg |
29740241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 8297626 - 8297590
Alignment:
| Q |
6 |
gatttatcaaataaataagggatgtttgtgcatagtg |
42 |
Q |
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|||| ||||||||||||||||| |||||||||||||| |
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| T |
8297626 |
gattcatcaaataaataagggaggtttgtgcatagtg |
8297590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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