View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10217_low_4 (Length: 281)

Name: NF10217_low_4
Description: NF10217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10217_low_4
NF10217_low_4
[»] chr4 (11 HSPs)
chr4 (12-269)||(10293003-10293260)
chr4 (12-269)||(11538329-11538586)
chr4 (12-194)||(15204954-15205136)
chr4 (12-269)||(11517485-11517727)
chr4 (12-178)||(16307660-16307826)
chr4 (12-178)||(3375338-3375504)
chr4 (211-281)||(19573380-19573450)
chr4 (21-184)||(39518462-39518625)
chr4 (211-281)||(16307572-16307642)
chr4 (191-269)||(39518617-39518695)
chr4 (13-190)||(19573456-19573633)
[»] chr3 (20 HSPs)
chr3 (12-274)||(9004051-9004313)
chr3 (12-269)||(16668677-16668934)
chr3 (12-190)||(14319190-14319368)
chr3 (12-269)||(1056155-1056397)
chr3 (12-281)||(14255508-14255762)
chr3 (12-241)||(14583616-14583848)
chr3 (12-281)||(11214266-11214523)
chr3 (12-150)||(4406782-4406920)
chr3 (12-267)||(15224310-15224550)
chr3 (191-269)||(29903918-29903996)
chr3 (191-269)||(29945084-29945162)
chr3 (191-269)||(29994238-29994316)
chr3 (14-178)||(1792116-1792280)
chr3 (68-280)||(9388873-9389079)
chr3 (213-281)||(4406666-4406734)
chr3 (198-281)||(1792285-1792368)
chr3 (12-190)||(29903754-29903932)
chr3 (12-190)||(29944920-29945098)
chr3 (12-190)||(29994074-29994252)
chr3 (145-194)||(18486370-18486419)
[»] scaffold0017 (1 HSPs)
scaffold0017 (12-269)||(177789-178046)
[»] scaffold0411 (2 HSPs)
scaffold0411 (12-281)||(670-924)
scaffold0411 (12-281)||(4701-4955)
[»] chr2 (9 HSPs)
chr2 (12-194)||(26869531-26869713)
chr2 (12-220)||(22766112-22766320)
chr2 (13-281)||(28377390-28377640)
chr2 (12-162)||(20415245-20415395)
chr2 (32-190)||(21170085-21170243)
chr2 (138-281)||(28729652-28729783)
chr2 (12-190)||(22749783-22749961)
chr2 (191-269)||(22749947-22750025)
chr2 (138-194)||(21129383-21129439)
[»] chr7 (4 HSPs)
chr7 (12-269)||(18421515-18421757)
chr7 (12-178)||(25209394-25209560)
chr7 (248-281)||(25209603-25209636)
chr7 (138-194)||(9162108-9162164)
[»] scaffold1362 (1 HSPs)
scaffold1362 (12-178)||(1772-1938)
[»] scaffold0497 (2 HSPs)
scaffold0497 (12-269)||(7892-8134)
scaffold0497 (209-269)||(1767-1827)
[»] chr6 (8 HSPs)
chr6 (12-190)||(13915563-13915741)
chr6 (12-269)||(22288292-22288534)
chr6 (14-178)||(18923656-18923820)
chr6 (198-274)||(25684452-25684528)
chr6 (225-281)||(25796146-25796202)
chr6 (214-281)||(18923841-18923908)
chr6 (12-115)||(25733100-25733203)
chr6 (76-116)||(25796305-25796345)
[»] chr1 (1 HSPs)
chr1 (12-178)||(21163510-21163676)
[»] scaffold0016 (1 HSPs)
scaffold0016 (12-281)||(194366-194626)
[»] chr5 (6 HSPs)
chr5 (12-178)||(17449066-17449232)
chr5 (12-269)||(21416628-21416870)
chr5 (12-280)||(34060295-34060548)
chr5 (14-178)||(19475695-19475859)
chr5 (213-281)||(17448978-17449046)
chr5 (75-194)||(23404201-23404320)
[»] scaffold0014 (1 HSPs)
scaffold0014 (12-269)||(218804-219046)
[»] scaffold0042 (1 HSPs)
scaffold0042 (12-175)||(1-164)
[»] scaffold0201 (1 HSPs)
scaffold0201 (12-274)||(755-1017)
[»] scaffold0012 (1 HSPs)
scaffold0012 (191-269)||(130020-130098)
[»] scaffold0272 (2 HSPs)
scaffold0272 (12-190)||(21693-21868)
scaffold0272 (12-190)||(16606-16781)
[»] chr8 (3 HSPs)
chr8 (12-147)||(3835270-3835405)
chr8 (212-281)||(18156149-18156218)
chr8 (208-253)||(3835191-3835236)
[»] scaffold0195 (2 HSPs)
scaffold0195 (191-262)||(28393-28464)
scaffold0195 (13-190)||(28450-28627)
[»] scaffold0670 (1 HSPs)
scaffold0670 (198-255)||(2039-2096)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 10293260 - 10293003
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| |||||||||||||||||| ||||| |||| |||| ||||| |||||| ||||||||||||||||| |||||  ||||| ||| |||    
T  10293260 gagatgaacagctcaaagcagcagggtatgagttggatgctgagaaagctgctgttattgcttctttagctgctgaattggaagagcaaactattaagga 10293161  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    ||||||  || |||||| ||| || ||||||| |||||||| |||||||||| ||||||||||||| |||||| |||||||   | |||||||  |||||    
T  10293160 aggagctgctttgttaaaacaggctctgaaagctaagcatgtttcaggagcatcaccttcagaacctacatcagaagctcctagatcagaagctactaga 10293061  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
     || ||||||| ||||||||||||||||||  ||| ||||||  ||||||||||||||    
T  10293060 ccaaaagctcatccttcaggtattccttcagttcctaaagcttcagtcaatattcaga 10293003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 11538586 - 11538329
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||| |||| |||||||||||||||||  ||||| |||| |||  |||||  ||||| ||| | ||||||||| | |||||| ||||||||| |||    
T  11538586 gagatgaaaagctcaaagcagcagggtatgaactggatgctgagaaaactgctgtgattgcttctcttgctgctgaaattgaagaacaaactgttaagga 11538487  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    ||||||  || |||||| ||| || ||||||| |||||||| ||||||||||||||||||| ||||| ||||| |||||||   | |||||||  |||||    
T  11538486 aggagctgctttgttaaaacaggctctgaaagctaagcatgtttcaggagcaacaccttcaaaaccagcatcagaagctcctagatcagaagctactaga 11538387  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
     |||||||||| ||||||||||||||||||  ||| ||||||  ||||||| ||||||    
T  11538386 ccagaagctcatccttcaggtattccttcagttcctaaagcttcagtcaatgttcaga 11538329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 15204954 - 15205136
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| || ||||||||||||| |     |||||||| || ||||| | ||||||||||||||||||| || ||||| |||| ||||| |||    
T  15204954 gagatgaacagctcaaggcagcagggtatgtgcctactcctgaaacagctgctgtttttgcctctttagctgctgagtttgaagaggaaattgttaagga 15205053  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccag 194  Q
    ||||||   | |||||| |||||| |||||||||||||||||||||| ||||| |||||||||||||  ||||||||||||||    
T  15205054 aggagcaaatctgttaaaacaagctctgaaaggtaagcatgcttcagaagcaataccttcagaaccagtatcaaaagctccag 15205136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 11517727 - 11517485
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| ||||||||||||||| |  ||||| |||| |||| |||||  ||||| ||| ||||||||||| | |||||| |||| |||| |||    
T  11517727 gagatgaacagctcaaagcagcagggtataatctggatgctgagaaagctgctgtgattgcttctctagctgctgaaattgaagaacaaacagttaagga 11517628  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    |||| |  || |||||| ||| || ||||||| |||| ||| || |||||||| ||||||||||               |||||| |||||||  |||||    
T  11517627 aggaactgctttgttaaaacaggctctgaaagctaagaatgttttaggagcaaaaccttcagaa---------------ccagcatcagaagctactaga 11517543  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
    ||||||||||| |||||||||||| |||||  ||||||||||||| ||||| ||||||    
T  11517542 tcagaagctcatccttcaggtatttcttcaggtccaaaagctaaaatcaatgttcaga 11517485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 16307826 - 16307660
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||||| || || ||||||||||||||| | | ||||||||||| ||| |  |||||||| |||||||||||  | | |||||||||||| | |||    
T  16307826 gagatgaacaactcaaggcagcagggtatgagcttgctcctgaaaaagctgcagaaattgcctcgttagctgctgagattgcagaagaaactgtcaagga 16307727  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaacca 178  Q
    ||||||  |  ||||||| |||||  ||||||| ||| ||||||||||||| ||  |||||||||||    
T  16307726 aggagcagccttgttaagtcaagctttgaaaggaaagaatgcttcaggagctacttcttcagaacca 16307660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 3375504 - 3375338
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||| | || ||||||||||||||| | | |||||| |||| |||||  ||||| ||| ||||||||||  | | |||||||| ||| | |||    
T  3375504 gagatgaacagttgaaggcagcagggtatgaggttgctcctgagaaagctgctgaaattgcttctctagctgctgagattgcagaagaaattgtcaagga 3375405  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaacca 178  Q
    |||| |  |  |||||||||||||  ||||||| ||||||||||||||||| ||  |||||||||||    
T  3375404 aggaacagccttgttaagacaagctttgaaaggaaagcatgcttcaggagctacttcttcagaacca 3375338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 19573450 - 19573380
Alignment:
Q  211 atcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
    |||||||||||||||||||||||||||||| || || ||||||| | |||||| |||||||||| ||||||    
T  19573450 atcagaagctcagccttcaggtattccttctcaacctaaagctagaatcaatactcagattcctaaccttc 19573380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 39518462 - 39518625
Alignment:
Q  21 agctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttagggaaggagcgtc 120  Q
    |||| |||||||||||||||||  ||||| |||| |||| |||||  ||||  ||| | ||||||||  | |||||| |||| |||| ||||||| |  |    
T  39518462 agctcaaagcagcagggtatgaactggatgctgagaaagctgctgtgattgtttctcttgctgctgagattgaagaacaaacagttaaggaaggaactgc 39518561  T
Q  121 tatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatca 184  Q
    | |||||| ||| || ||||||| |||| ||| ||||||||||| ||||| ||||||| |||||    
T  39518562 tttgttaaaacaggctctgaaagctaagaatgtttcaggagcaaaacctttagaaccagcatca 39518625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 16307642 - 16307572
Alignment:
Q  211 atcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
    ||||||||||||||||||| ||||| ||||  | || ||||||| | |||||| |||||||||||||||||    
T  16307642 atcagaagctcagccttcaagtattacttctgaacctaaagctagaatcaatactcagattcctgaccttc 16307572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 39518617 - 39518695
Alignment:
Q  191 ccagcaacagaagcagctagatcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
    |||||| ||||||  ||||||||||| ||||| |||||||||||| |||||  ||||||||||||  ||||| ||||||    
T  39518617 ccagcatcagaagttgctagatcagatgctcaaccttcaggtatttcttcaggtccaaaagctaacatcaatgttcaga 39518695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 19573633 - 19573456
Alignment:
Q  13 agatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttagggaa 112  Q
    ||||||||||||||| ||||||||||| ||| | | || ||| |||| |||    ||||| || || ||||||||  | | |||||||||||| | ||||    
T  19573633 agatgaacagctaaaggcagcagggtaagagcttgctcttgagaaagctgcaaaaattgcttcattggctgctgagattgcagaagaaactgtcaaggaa 19573534  T
Q  113 ggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagct 190  Q
    |||||  |  ||||||| |||||  ||||||| ||| ||||||||||||| ||  ||||||||||| | ||| |||||    
T  19573533 ggagcagccttgttaagtcaagctttgaaaggaaagaatgcttcaggagctacttcttcagaaccagcttcataagct 19573456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 9004051 - 9004313
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| |||||||||||||||||| ||||| |||| |||| ||| |  ||||| ||||| ||||||||  | ||||||||||||||||||||    
T  9004051 gagatgaacagctcaaagcagcagggtatgagctggatgctgagaaagctgcggtaattgcttctttggctgctgagattgaagaagaaactgttaggga 9004150  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    ||||||  || ||||||  || || ||||||| ||||||||  |||||||||||| ||||||||||| ||||| |||||||   | |||||||  ||||     
T  9004151 aggagctgctttgttaaagcaggctctgaaagctaagcatgtctcaggagcaacatcttcagaaccagcatcagaagctcctaaatcagaagctactagg 9004250  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcct 274  Q
     |||||||||| |||||||||||||||||   ||| ||||||  |||||||||||||| ||||    
T  9004251 ccagaagctcatccttcaggtattccttctgttccgaaagcttcagtcaatattcagactcct 9004313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 16668677 - 16668934
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| |||||||||||||||||| ||||| |||| |||| | |||  ||||| ||||||||||||||  | |||||| ||||||||| |||    
T  16668677 gagatgaacagctcaaagcagcagggtatgagttggatgctgagaaagcttctgtaattgcttctttagctgctgagattgaagaacaaactgttaagga 16668776  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    ||||||  || |||||| ||| || ||||||| |||| | | ||||||||||| | ||||| ||||| ||||| |||||||   | ||||||| ||||||    
T  16668777 aggagctgctctgttaaaacaggctctgaaagctaagaacgtttcaggagcaaaatcttcaaaaccagcatcagaagctcctagatcagaagctgctaga 16668876  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
     |||||||||| || ||||||||||||||| |||| |||||| |||||||| ||||||    
T  16668877 ccagaagctcatccatcaggtattccttcagatcctaaagctcaagtcaatgttcaga 16668934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 14319190 - 14319368
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||| |||| ||||| | ||||||||||||||||| | || ||||| |||| ||||| |||    
T  14319190 gagatgaacagctcaaagcagtagggtatgaaatggatcctgagaaagctgctgtttttgcctctttagctgctaagtttgaagaggaaattgttaagga 14319289  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagct 190  Q
    || |||  || |||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||| ||| |||||    
T  14319290 agaagcagctctgttaaaacaagcactgaaaggtaagaatgcttcagaagcagcaccttcagaaccaacttcagaagct 14319368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 1056397 - 1056155
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||||| || |||||||||||||||||  ||||| |||| |||| || ||  ||||| ||||||||||||||  | |||||| |||| |||| |||    
T  1056397 gagatgaacaactcaaagcagcagggtatgaactggatgctgataaagctgttgtgattgcttctttagctgctgagattgaagaacaaacagttaagga 1056298  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    |||| |  || |||||| |||||||||||||| |||| ||| ||||||||||| ||||||||||               |||||  |||||||  |||||    
T  1056297 aggaactgctttgttaaaacaagcactgaaagctaagaatgtttcaggagcaaaaccttcagaa---------------ccagcttcagaagctactaga 1056213  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
    ||||||||||| |||||||||||| |||||  ||||||||||||| ||||| ||||||    
T  1056212 tcagaagctcaaccttcaggtatttcttcaggtccaaaagctaaaatcaatgttcaga 1056155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 14255508 - 14255762
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| || ||||||||||||||| | | |||||| |||| ||| |  ||| | || |||||||||||| | | |||||||||||| | |||    
T  14255508 gagatgaacagctcaaggcagcagggtatgagcttgctcctgagaaagctgcagaaatttcttcattagctgctgaaattgcagaagaaactgtcaagga 14255607  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    ||||||  || ||||||||||| |  ||||||| ||||||||||||||||| ||  ||||||||||| | ||| ||||| |  ||||                 
T  14255608 aggagcagctttgttaagacaaactttgaaaggaaagcatgcttcaggagctacttcttcagaaccagcttcagaagctac-tcaac------------- 14255693  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
     ||||||||||  |||||||||||||||| || || ||||||||||||||||||||||||||||||||||    
T  14255694 -cagaagctcattcttcaggtattccttctcaacctaaagctaaagtcaatattcagattcctgaccttc 14255762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 14583848 - 14583616
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||| | || |||||||||||||||||| ||||| |||| |||| ||||  ||||  ||| |||||||||||||| ||||| |||||||| | |||    
T  14583848 gagatgaaaatcttaaagcagcagggtatgaggtggatgctgagaaagctgctattattaactcattagctgctgaattggaagaggaaactgtcaagga 14583749  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaa---ccaacatcaaaagctccagcaacagaagcagct 208  Q
    ||||||  || | ||||  || || ||||||| |||| ||| ||||||||||||| ||||||||   || | |||| ||||||||  ||||||||| |||    
T  14583748 aggagctactttattaaagcaggctctgaaagctaagaatgtttcaggagcaacatcttcagaagctcctagatcagaagctccaagaacagaagctgct 14583649  T
Q  209 agatcagaagctcagccttcaggtattccttca 241  Q
    | | || ||| ||| || |||||||||||||||    
T  14583648 aaaccaaaagttcatccatcaggtattccttca 14583616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 11214266 - 11214523
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| || ||||| ||||||||| | | |||||| || | |||||  || ||  ||||| |||||||||| ||||| ||| |||| | |||    
T  11214266 gagatgaacagctcaaggcagctgggtatgagcttgctcctgagaaggctgctgtgatagctactttaactgctgaattggaagaggaagctgtcaagga 11214365  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    |||||      |||||  |||||| |||||||| ||||||||||||||||| ||  | ||||||||| |||||||||||       |||||||||||       
T  11214366 aggagtaaaattgttatcacaagccctgaaaggaaagcatgcttcaggagctacttcatcagaaccagcatcaaaagct------tcagaagcagctcat 11214459  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
     ||||||||||  |||||||||| ||||      | |||||||||||||||| |||||||||||||||||    
T  11214460 ccagaagctcattcttcaggtatccctt------ctaaagctaaagtcaatactcagattcctgaccttc 11214523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 4406920 - 4406782
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| || ||||||||||||||| | | |||||| |||| ||| |  ||||| || || ||||||||| | ||||| ||||||||||||||    
T  4406920 gagatgaacagctcaaggcagcagggtatgagcttgctcctgagaaagctgcagaaattgcttccttggctgctgaacttgaagaggaaactgttaggga 4406821  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagca 150  Q
    ||||||   | ||||||| ||||| || ||||| |||||    
T  4406820 aggagcaaatctgttaaggcaagccctaaaaggaaagca 4406782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 15224310 - 15224550
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| ||||||||||||||| |  |||||  ||| |||| || ||  ||||| ||  ||||||||||| | |||||| |||| |||| |||    
T  15224310 gagatgaacagctcaaagcagcagggtataatctggatgttgagaaagctgttgtgattgcttcactagctgctgaaattgaagaacaaacagttaagga 15224409  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    | ||||  || |||||| ||| || ||||||| |||  | | ||||||||||| ||||||||||               |||||| ||||| | ||||||    
T  15224410 atgagctgctttgttaaaacaggctctgaaagctaaaaacgtttcaggagcaaaaccttcagaa---------------ccagcatcagaaactgctaga 15224494  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattca 267  Q
    ||||||||||| |||||||||||| |||||  ||||||||||||| ||||| ||||    
T  15224495 tcagaagctcatccttcaggtatttcttcaggtccaaaagctaaaatcaatgttca 15224550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 29903918 - 29903996
Alignment:
Q  191 ccagcaacagaagcagctagatcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
    |||||| |||||||  |||||||||||||||  |||||||||||| ||||| |||||||||||| | ||||| ||||||    
T  29903918 ccagcatcagaagctactagatcagaagctcgtccttcaggtatttcttcagatccaaaagctagaatcaatgttcaga 29903996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 29945084 - 29945162
Alignment:
Q  191 ccagcaacagaagcagctagatcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
    |||||| |||||||  |||||||||||||||  |||||||||||| ||||| |||||||||||| | ||||| ||||||    
T  29945084 ccagcatcagaagctactagatcagaagctcgtccttcaggtatttcttcagatccaaaagctagaatcaatgttcaga 29945162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 29994238 - 29994316
Alignment:
Q  191 ccagcaacagaagcagctagatcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
    |||||| |||||||  |||||||||||||||  |||||||||||| ||||| |||||||||||| | ||||| ||||||    
T  29994238 ccagcatcagaagctactagatcagaagctcgtccttcaggtatttcttcagatccaaaagctagaatcaatgttcaga 29994316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 1792116 - 1792280
Alignment:
Q  14 gatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttagggaag 113  Q
    ||||||||||| || ||||||||||| ||  | | |||||| |||| ||| |  |||||||| |||||||||||  | | |||||||||||| | |||||    
T  1792116 gatgaacagctcaaggcagcagggtacgaacttgctcctgataaagctgcagaaattgcctcattagctgctgagattgcagaagaaactgtcaaggaag 1792215  T
Q  114 gagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaacca 178  Q
    |||| ||  ||||||| |||||  ||||||| ||| |||||||| || | ||  |||||||||||    
T  1792216 gagcatccttgttaagtcaagctttgaaaggaaagaatgcttcaagaactacttcttcagaacca 1792280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 280
Target Start/End: Original strand, 9388873 - 9389079
Alignment:
Q  68 attgcctctttagctgctgaattagaagaagaaactgttagggaaggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacac 167  Q
    ||||| ||||||||||||||||||||| |||||||||| | ||||||||   |  || ||  ||||||  |||||| |||||||||||||||||| ||      
T  9388873 attgcttctttagctgctgaattagaacaagaaactgtcaaggaaggagtagcattgctatcacaagctttgaaagataagcatgcttcaggagctactt 9388972  T
Q  168 cttcagaaccaacatcaaaagctccagcaacagaagcagctagatc-agaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattc 266  Q
    | ||||||||| | || |||||| |||      ||||||||  ||| ||||| |||  |||||||||||| | |     |||||||||||||||||| ||    
T  9388973 catcagaaccagcttctaaagcttcag------aagcagctc-atctagaaggtcaatcttcaggtattcatactttctcaaaagctaaagtcaatactc 9389065  T
Q  267 agattcctgacctt 280  Q
    ||||||||||||||    
T  9389066 agattcctgacctt 9389079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 4406734 - 4406666
Alignment:
Q  213 cagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
    ||||||||||  ||| |||||||||||| || || |||||||||  ||||| |||||||||||||||||    
T  4406734 cagaagctcattctttaggtattccttctcaacctaaagctaaaagcaatactcagattcctgaccttc 4406666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 281
Target Start/End: Original strand, 1792285 - 1792368
Alignment:
Q  198 cagaagcagctagatcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
    ||||||| |||  |||||||||||||||||||||||||||| | ||  | ||||||| | |||||  ||||||||||| |||||    
T  1792285 cagaagctgctcaatcagaagctcagccttcaggtattcctactcaatctaaagctagaatcaattctcagattcctgcccttc 1792368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 29903754 - 29903932
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| ||||| ||||||||||   ||||| |||| |||| |||||  |||||  || | ||||||||| | |||||| |||| || | |||    
T  29903754 gagatgaacagctcaaagctgcagggtatgtactggatgctgagaaagctgctgagattgctgctctggctgctgaaattgaagaacaaacagtcaagga 29903853  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagct 190  Q
    |||| |  || |||||| |  ||| ||||||| |||| |   ||||| ||||| ||||||||||||| ||||| |||||    
T  29903854 aggaactgctttgttaaaaggagctctgaaagctaagaacatttcagaagcaaaaccttcagaaccagcatcagaagct 29903932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 29944920 - 29945098
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| ||||| ||||||||||   ||||| |||| |||| |||||  |||||  || | ||||||||| | |||||| |||| || | |||    
T  29944920 gagatgaacagctcaaagctgcagggtatgtactggatgctgagaaagctgctgagattgctgctctggctgctgaaattgaagaacaaacagtcaagga 29945019  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagct 190  Q
    |||| |  || |||||| |  ||| ||||||| |||| |   ||||| ||||| ||||||||||||| ||||| |||||    
T  29945020 aggaactgctttgttaaaaggagctctgaaagctaagaacatttcagaagcaaaaccttcagaaccagcatcagaagct 29945098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 29994074 - 29994252
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| ||||| ||||||||||   ||||| |||| |||| |||||  |||||  || | ||||||||| | |||||| |||| || | |||    
T  29994074 gagatgaacagctcaaagctgcagggtatgtactggatgctgagaaagctgctgagattgctgctctggctgctgaaattgaagaacaaacagtcaagga 29994173  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagct 190  Q
    |||| |  || |||||| |  ||| ||||||| |||| |   ||||| ||||| ||||||||||||| ||||| |||||    
T  29994174 aggaactgctttgttaaaaggagctctgaaagctaagaacatttcagaagcaaaaccttcagaaccagcatcagaagct 29994252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 18486419 - 18486370
Alignment:
Q  145 taagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccag 194  Q
    |||||| ||||||||||||||  ||||||||||| ||||| |||||||||    
T  18486419 taagcaagcttcaggagcaacttcttcagaaccagcatcagaagctccag 18486370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 178046 - 177789
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||||||||||||||||||||||||||  ||||| |||| |||| |||||  ||||| ||||||||||||||  | |||||||||||||||| |||    
T  178046 gagatgaacagctaaaagcagcagggtatgaactggatgctgagaaagctgctgtgattgcttctttagctgctgagattgaagaagaaactgttaagga 177947  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    ||||||  || ||||||   | || ||||||| |||||||| ||||||||||||| |||||||||||  |||| |||||||   | |||||||  |||      
T  177946 aggagctgctttgttaaagtaggctctgaaagctaagcatgtttcaggagcaacatcttcagaaccagaatcagaagctcctagatcagaagctactaag 177847  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
      ||||||||| ||||||||||||||||||  ||| ||||||  ||||||||||||||    
T  177846 caagaagctcatccttcaggtattccttcagttcctaaagcttcagtcaatattcaga 177789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 670 - 924
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| |||||||||||||||||| | ||| || || ||| ||| |  ||||| ||||| ||||||||  | | ||| || ||||||| |||    
T  670 gagatgaacagcttaaagcagcagggtatgagctagatgctaaacaagctgcagtaattgcttctttggctgctgagattgcagaggatactgttaagga 769  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    ||||||  || |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| |               ||||||| | | ||    
T  770 aggagcagctctgttaagacaagcactgaaaggtaagaatgcttcagaagcagcaccttcagaaccaactt---------------cagaagctgatgga 854  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
    ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  855 tcagatgctcagccttcaggtattccttcaaatccaaaggctaaagtcaatattcagattcctgagcttc 924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 4701 - 4955
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| |||||||||||||||||| | ||| || || ||| ||| |  ||||| ||||| ||||||||  | | ||| || ||||||| |||    
T  4701 gagatgaacagcttaaagcagcagggtatgagctagatgctaaacaagctgcagtaattgcttctttggctgctgagattgcagaggatactgttaagga 4800  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    ||||||  || |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| |               ||||||| | | ||    
T  4801 aggagcagctctgttaagacaagcactgaaaggtaagaatgcttcagaagcagcaccttcagaaccaactt---------------cagaagctgatgga 4885  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
    ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  4886 tcagatgctcagccttcaggtattccttcaaatccaaaggctaaagtcaatattcagattcctgagcttc 4955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 26869713 - 26869531
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||||||||||| ||||||||||||| |   | |||||||| || ||||| | ||||||||||||||||||| || |||||  ||| ||||| |||    
T  26869713 gagatgaacagctaaaggcagcagggtatgtgcctgctcctgaaacagctgctgtttttgcctctttagctgctgagtttgaagagtaaattgttaagga 26869614  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccag 194  Q
    | ||||   | |||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  26869613 atgagcaaatctgttaaaacaagctctgaaaggtaagcatgcttcagaagcaacaccttcagaaccagcatcaaaagctccag 26869531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 22766320 - 22766112
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||| | |||||||||||||||||| ||||| |||| |||| ||| |  ||||| |||||||| || ||| | |||||||||||||| | |||    
T  22766320 gagatgaacaggtcaaagcagcagggtatgagctggatgctgagaaagctgcggtaattgcttctttagccgcagaaattgaagaagaaactgtgaagga 22766221  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    ||||||  || ||||||  || || ||||||| |||||||| ||||||||||||| ||||||||||| ||||| ||||| | ||| |||||||| | |||    
T  22766220 aggagctgctttgttaaagcaggctctgaaagctaagcatgtttcaggagcaacatcttcagaaccagcatcagaagctgctgcatcagaagcaaccaga 22766121  T
Q  212 tcagaagct 220  Q
    ||| |||||    
T  22766120 tcataagct 22766112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 28377390 - 28377640
Alignment:
Q  13 agatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttagggaa 112  Q
    |||||||||||| |||||||||||||||||| | | |||||| |||  ||| |  ||||| || || ||||||||| | ||||| |||||||||||||||    
T  28377390 agatgaacagctcaaagcagcagggtatgagcttgctcctgagaaacctgcagaaattgcttccttggctgctgaacttgaagaggaaactgttagggaa 28377489  T
Q  113 ggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctagat 212  Q
    |||||   | |||| || ||||| |||||||| |||||| ||||||||||  |   |||||||||| ||||| |||||               |||| ||    
T  28377490 ggagcaaatctgttcaggcaagccctgaaaggaaagcatacttcaggagcttc---ttcagaaccagcatcagaagct---------------gctaaat 28377571  T
Q  213 cagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
    ||||||||||| |||||||||||||||| || || ||||||||| ||||||||||||||||||||||||    
T  28377572 cagaagctcagtcttcaggtattccttctcaacctaaagctaaaatcaatattcagattcctgaccttc 28377640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 20415245 - 20415395
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||||| || || ||||||||||||||| | | || ||| ||||  |||  |||||||||| | ||||||||||| ||||| |||||||| | |||    
T  20415245 gagatgaacaactcaaggcagcagggtatgagcttgctcttgagaaagcagcttttattgcctctctggctgctgaattggaagaggaaactgtcaagga 20415344  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagc 162  Q
    ||||||  |  ||||||||||||| |||||||| |||||| ||||||||||    
T  20415345 aggagcagccctgttaagacaagccctgaaaggaaagcatacttcaggagc 20415395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 21170085 - 21170243
Alignment:
Q  32 gcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttagggaaggagcgtctatgttaagac 131  Q
    |||||||||||| | | ||||||||| | |||||  || ||  |||||||||||||||| ||| |||||||||| | |||||||||  |  |||||  ||    
T  21170085 gcagggtatgagcttgctcctgaaaaggctgctgagatggctgctttagctgctgaattggaacaagaaactgtcaaggaaggagcagcattgttatcac 21170184  T
Q  132 aagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagct 190  Q
    ||||  |||||| |||||||||||||||||| ||  | ||||||||||| || ||||||    
T  21170185 aagctttgaaagataagcatgcttcaggagctacttcatcagaaccaacttctaaagct 21170243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 281
Target Start/End: Original strand, 28729652 - 28729783
Alignment:
Q  138 tgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctagatcagaagctcagccttcaggta-ttc 236  Q
    |||||| |||||||||||||||||| ||  | ||||||||| |||| ||||||||||      ||||||||    ||||||||||  ||||||||| |||    
T  28729652 tgaaagataagcatgcttcaggagctacttcatcagaaccagcatctaaagctccag------aagcagctcatccagaagctcactcttcaggtacttc 28729745  T
Q  237 cttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
    |||       ||||||||||||||||| |||||||||||||||||    
T  28729746 ctt-------aaaagctaaagtcaatactcagattcctgaccttc 28729783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 22749783 - 22749961
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||||| || ||||| | ||||||||   ||||| |||| |||| |||||  ||||| ||| | ||||||||| | |||||| ||||  |||  ||    
T  22749783 gagatgaacaactcaaagctgtagggtatgtattggatgctgagaaagctgctgaaattgcttctctggctgctgaaattgaagaacaaacaattaaaga 22749882  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagct 190  Q
    |||| |  || ||||||   |||||||||||| |||| | | ||||| ||||| ||||||||||||| ||||| |||||    
T  22749883 aggaactgctttgttaaaggaagcactgaaagctaagaacgtttcagaagcaaaaccttcagaaccagcatcagaagct 22749961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 22749947 - 22750025
Alignment:
Q  191 ccagcaacagaagcagctagatcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
    |||||| ||||||| ||| ||||||||||||| || ||| ||||| ||||| |||| |||||| || ||||| ||||||    
T  22749947 ccagcatcagaagctgctcgatcagaagctcatccatcatgtatttcttcagatccgaaagctcaattcaatgttcaga 22750025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 21129383 - 21129439
Alignment:
Q  138 tgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccag 194  Q
    ||||||| ||||||||||||||||| ||  | ||||||||| |||| ||||||||||    
T  21129383 tgaaaggaaagcatgcttcaggagctacttcatcagaaccagcatctaaagctccag 21129439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 18421757 - 18421515
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||||||||||||||||||||||||||  ||||| |||| |||| || ||  ||||| ||||||||||||||  | |||||| ||||||||| |||    
T  18421757 gagatgaacagctaaaagcagcagggtatgaactggatgctgataaagctgatgtgattgcttctttagctgctgagattgaagaataaactgttaagga 18421658  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    |||| |  |  |||||| ||||||| |||||| |||| | | ||||||||||| ||||||||||               |||| | ||||||| |||| |    
T  18421657 aggaactgccttgttaaaacaagcattgaaagctaagaacgtttcaggagcaaaaccttcagaa---------------ccagtatcagaagctgctaca 18421573  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||| ||||| ||||||    
T  18421572 tcagaagctcagccttcaggtatttcttcaaatcctaaagctaaaatcaatgttcaga 18421515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 25209394 - 25209560
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||| | || ||||||||||||||| | | || ||| |||| |||    ||||| ||||| |||| |||  | | |||||| ||||||| |||    
T  25209394 gagatgaacagtttaaggcagcagggtatgagcttgctcttgagaaagctgcaataattgcttctttggctgttgagattgcagaagatactgttaagga 25209493  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaacca 178  Q
    ||||||  || |||||||||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  25209494 aggagccgctctgttaagacaagcactgaaaggtaagcatgcttcaggagctacttcttcagaacca 25209560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 25209603 - 25209636
Alignment:
Q  248 aaagctaaagtcaatattcagattcctgaccttc 281  Q
    ||||||||||||||||||||||||||||||||||    
T  25209603 aaagctaaagtcaatattcagattcctgaccttc 25209636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 9162164 - 9162108
Alignment:
Q  138 tgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccag 194  Q
    |||||| |||||||||||||||||| ||  | ||||||||| |||| ||||||||||    
T  9162164 tgaaagataagcatgcttcaggagctacttcatcagaaccagcatctaaagctccag 9162108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1362 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold1362
Description:

Target: scaffold1362; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 1772 - 1938
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||| |||| || ||||||||||||||| | | |||||| |||| ||| | |||||| || || ||||||||  | | |||||||||| ||| |||    
T  1772 gagatgaatagctcaaggcagcagggtatgagcttgctcctgagaaagctgcagatattgcttcgttggctgctgagattgcagaagaaacttttaagga 1871  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaacca 178  Q
    ||||||  || |||||||||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  1872 aggagccgctctgttaagacaagcactgaaaggtaagcatgcttcaggagctacttcttcagaacca 1938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 7892 - 8134
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| |||||||||||||| ||  ||||| |||| |||| |||||  ||||| ||| ||||||||||| | |||||| |||| |||| |||    
T  7892 gagatgaacagctcaaagcagcagggtaagatctggatgctgagaaagctgctgtgattgcttctctagctgctgaacttgaagaacaaacagttaagga 7991  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    |||| |  || |||||| | ||||||||||||||||| | | ||||| ||||| ||||||||||               |||||| |||||||  |||||    
T  7992 aggaactgctttgttaaaagaagcactgaaaggtaagaacgtttcagaagcaaaaccttcagaa---------------ccagcatcagaagctactaga 8076  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
    ||||||||||| |||||||||||| ||||| ||||||||||| || ||||| ||||||    
T  8077 tcagaagctcatccttcaggtatttcttcagatccaaaagctcaattcaatgttcaga 8134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 1767 - 1827
Alignment:
Q  209 agatcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||| || ||||| ||||||    
T  1767 agatcagaagctcatccttcaggtatttcttcagatccaaaagctcaattcaatgttcaga 1827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 13915741 - 13915563
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||||| || ||||||| |||||||||| ||||| |||| |||| |||||  ||||||||||||||||||||||| |||||  ||||||||| |||    
T  13915741 gagatgaacaacttaaagcagtagggtatgagctggattctgagaaagctgctgtaattgcctctttagctgctgaattggaagagcaaactgttaagga 13915642  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagct 190  Q
    ||||||  || ||||||  || || ||||||| |||| | | ||||||| ||| | ||||||||||| ||||| |||||    
T  13915641 aggagctgctttgttaaagcaggctctgaaagctaagaacgtttcaggatcaaaatcttcagaaccagcatcagaagct 13915563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 22288534 - 22288292
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||||| || ||||||||||||||| |  ||||| |||| |||| |||||  ||||| ||| ||||||||||| | |||||| | || |||| |||    
T  22288534 gagatgaacaactcaaagcagcagggtataatctggatgctgagaaagctgctgtgattgcttctctagctgctgaaattgaagaacagacagttaagga 22288435  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    |||| |  || |||||| | |||||||||||| |||| ||| ||||  ||||| ||| |||||||||  |||| ||||| |               ||||    
T  22288434 aggaactgctttgttaaaagaagcactgaaagctaagaatgtttcataagcaaaaccatcagaaccagtatcagaagctac---------------taga 22288350  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||| ||||| ||||||    
T  22288349 tcagaagctcatccttcaggtatttcttcagatccaaaagctaaattcaatgttcaga 22288292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 18923656 - 18923820
Alignment:
Q  14 gatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttagggaag 113  Q
    ||||||||||| || ||||||||||| ||  | | |||||| |||| ||| |  |||||||| |||||||||||  | | |||||||||||| | |||||    
T  18923656 gatgaacagctcaaggcagcagggtacgaacttgctcctgagaaagctgcagaaattgcctcattagctgctgagattgcagaagaaactgtcaaggaag 18923755  T
Q  114 gagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaacca 178  Q
    |||| ||  ||||||| |||||  ||||||| ||| ||||||||||||| ||  |||||||||||    
T  18923756 gagcatccttgttaagtcaagctttgaaaggaaagaatgcttcaggagctacttcttcagaacca 18923820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 25684452 - 25684528
Alignment:
Q  198 cagaagcagctagatcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcct 274  Q
    ||||||| | |||||||||||||||||||||||||| | ||||| |||||||||||||  |||| ||||||| ||||    
T  25684452 cagaagctgttagatcagaagctcagccttcaggtaattcttcagatccaaaagctaacatcaaaattcagactcct 25684528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 25796202 - 25796146
Alignment:
Q  225 cttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
    |||||||||||||||| || || |||||||||||||||| |||||||| ||||||||    
T  25796202 cttcaggtattccttctcaacctaaagctaaagtcaatactcagattcttgaccttc 25796146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 18923841 - 18923908
Alignment:
Q  214 agaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
    ||||||||| ||||||||||||||||| || || ||||||| | |||||| ||||||||||| |||||    
T  18923841 agaagctcaaccttcaggtattccttctcaacctaaagctagaatcaatactcagattcctgcccttc 18923908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 25733100 - 25733203
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||||| || ||||| || ||||||||| | ||| |||| |||| |||||  ||||| || || | ||||||  | ||||||||||||||||||||    
T  25733100 gagatgaacaactcaaagctgctgggtatgagcttgatgctgagaaagctgctgtgattgcttccttggttgctgagattgaagaagaaactgttaggga 25733199  T
Q  112 agga 115  Q
    ||||    
T  25733200 agga 25733203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 25796345 - 25796305
Alignment:
Q  76 tttagctgctgaattagaagaagaaactgttagggaaggag 116  Q
    ||||||||||||||||||| |||||||||| | ||||||||    
T  25796345 tttagctgctgaattagaacaagaaactgtcaaggaaggag 25796305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 21163676 - 21163510
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||| | || |||||| |||||||| | | ||||||| ||| ||| |  ||||| ||||| ||||||||  | | |||||| ||||||| |||    
T  21163676 gagatgaacagttgaaggcagcaaggtatgagcttgctcctgaacaagctgcagtaattgcttctttggctgctgagattgcagaagatactgttaagga 21163577  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaacca 178  Q
    ||||||  || |||||||||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  21163576 aggagccgctctgttaagacaagcactgaaaggtaagcatgcttcaggagctacttcttcagaacca 21163510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 194626 - 194366
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||||| || || ||||| ||||||||| | | |||||| || | |||||  |||||  ||||| ||||||||||||||||||||| ||| | |||    
T  194626 gagatgaacaactcaaggcagctgggtatgagcttgctcctgagaaggctgctgtgattgctactttaactgctgaattagaagaagaaaatgtcaagga 194527  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    |||||   |  ||||||||||| | |||||||| |||||| |||||||||   |  ||||||||||||||||||||||||      ||||||| |||  |    
T  194526 aggagtagcactgttaagacaatccctgaaaggaaagcatacttcaggag---cttcttcagaaccaacatcaaaagctc------cagaagctgctcaa 194436  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
    ||| ||| |||  |||||||||||||||| ||    ||||||| | | ||||||||||||||||||||||    
T  194435 tcaaaaggtcaatcttcaggtattccttctcaatataaagctagaattaatattcagattcctgaccttc 194366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 17449232 - 17449066
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| || ||||||||||||||| | | |||||| |||||||| |  ||||| || || ||||||||| | ||||| ||||||||||||||    
T  17449232 gagatgaacagctcaaggcagcagggtatgagcttgctcctgagaaagttgcagaaattgcttccttggctgctgaacttgaagaggaaactgttaggga 17449133  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaacca 178  Q
    ||||||   ||||||||| ||||| | |||||| |||||  |||||| ||| ||  |||||||||||    
T  17449132 aggagcaaatatgttaaggcaagcccggaaaggaaagcacacttcagaagctacttcttcagaacca 17449066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 21416870 - 21416628
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| ||||||||||||||| |  ||||| || | |||| || ||  ||||| ||| ||||||||||| | |||||| |||| |||| |||    
T  21416870 gagatgaacagctcaaagcagcagggtataatctggatgctaagaaagctgttgtgattgcttctctagctgctgaaattgaagaacaaacagttaagga 21416771  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    |||| |  ||  ||||| | |||||||||||| |||| ||| ||||| ||||| ||||||||||               ||||||  ||||||  |||||    
T  21416770 aggaactgcttcgttaaaagaagcactgaaagataagaatgtttcagaagcaaaaccttcagaa---------------ccagcattagaagctactaga 21416686  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||| ||||| ||||||    
T  21416685 tcagaagctcatccttcaggtatttcttcagatccaaaagctaaattcaatgttcaga 21416628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 34060295 - 34060548
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| || ||||||||||||||| | | |||||| |||| ||| |  ||||| || || ||||||||  ||| |||||||||||| | |||    
T  34060295 gagatgaacagctcaaggcagcagggtatgagtttgctcctgagaaagctgcagaaattgcttcattggctgctgagatagcagaagaaactgtcaagga 34060394  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    ||||||  |  ||||||| |||||  ||||||| ||| ||||||||||| | ||  ||||||||               |||||  ||||||| |||  |    
T  34060395 aggagcagccttgttaagtcaagctttgaaaggaaagaatgcttcaggaactacttcttcagaa---------------ccagcttcagaagctgctcaa 34060479  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgacctt 280  Q
    |||||||||||||||||||||||||||||  | || ||||||| | |||||| ||||||||||||||||    
T  34060480 tcagaagctcagccttcaggtattccttctgaacctaaagctagaatcaatactcagattcctgacctt 34060548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 19475695 - 19475859
Alignment:
Q  14 gatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttagggaag 113  Q
    |||||||| || || || ||||| |||||| | |||||||| ||||  | ||  |||||  ||||||||||||||||||||||||||||||| | |||||    
T  19475695 gatgaacaactcaaggctgcaggttatgagcttgatcctgagaaagcagttgtaattgctactttagctgctgaattagaagaagaaactgtcaaggaag 19475794  T
Q  114 gagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaacca 178  Q
    |||   |  |||||  ||||||  ||||||| ||||||||||||||||| ||  |||||||||||    
T  19475795 gagtagcattgttatcacaagctttgaaaggaaagcatgcttcaggagctacttcttcagaacca 19475859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 17449046 - 17448978
Alignment:
Q  213 cagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
    ||||||||||  |||||||||||||||| || || ||||||||| |||||| |||||||| ||||||||    
T  17449046 cagaagctcattcttcaggtattccttctcaacctaaagctaaaatcaatactcagattcttgaccttc 17448978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 23404201 - 23404320
Alignment:
Q  75 ctttagctgctgaattagaagaagaaactgttagggaaggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcaga 174  Q
    ||||||||||||| |||||| |||| ||||| | ||||||||   |  |||||  ||||||  ||||||| ||||||||||||||||| ||  | |||||    
T  23404201 ctttagctgctgagttagaacaagagactgtcaaggaaggagtagcattgttatcacaagctttgaaaggaaagcatgcttcaggagctacttcatcaga 23404300  T
Q  175 accaacatcaaaagctccag 194  Q
    |||| |||| ||||||||||    
T  23404301 accagcatctaaagctccag 23404320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 219046 - 218804
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| ||||||||||||||| |  ||||| |||| |||| |||||  ||||| ||| ||||| ||||| | |||||| |||| |||| |||    
T  219046 gagatgaacagctcaaagcagcagggtataatctggatgctgagaaagctgctgtgattgcttctctagctactgaaattgaagaacaaacagttaagga 218947  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    |||| |  || |||||| | | || ||||||| |||  | | ||||||||||| ||||||||||||| ||||| ||||| |               ||||    
T  218946 aggaactgctttgttaaaagaggctctgaaagctaaaaacgtttcaggagcaaaaccttcagaaccagcatcagaagctac---------------taga 218862  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||| ||||| ||||||    
T  218861 tcagaagctcatccttcaggtatttcttcagatccaaaagctaaattcaatgttcaga 218804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 164 - 1
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    |||||||||| || ||||||||||||||| |  ||||| |||| |||| |||||  ||||| ||| ||||||||||| | |||||| |||| |||| |||    
T  164 gagatgaacatctcaaagcagcagggtattatctggatgctgagaaagctgctgtgattgcttctctagctgctgaacttgaagaacaaacagttaagga 65  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaa 175  Q
    |||| |  || |||||| | |||||||||||| |||| ||| ||||| ||||| ||| ||||||    
T  64 aggaactgctttgttaaaagaagcactgaaagctaagaatgtttcagaagcaaaaccatcagaa 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 1017 - 755
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| ||||| || || |||||| ||||| |||| ||||  ||||  ||||| ||||| | ||||||  | |||||||| ||||| | |||    
T  1017 gagatgaacagcttaaagctgctggatatgagctggatgctgagaaagcagctgtaattgcttctttggttgctgagattgaagaagacactgtcaagga 918  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagctccagcaacagaagcagctaga 211  Q
    ||||||  |  ||||||  || || ||||||| |||||||| | ||| ||||||  ||||||||||| ||||| ||||| |  || |||||||   |||     
T  917 aggagctgccttgttaaagcaggctctgaaagataagcatgttccagaagcaacctcttcagaaccagcatcagaagctgctacatcagaagccattagg 818  T
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcct 274  Q
     |||||||||| |||||||||||||||||   ||| ||||||  || ||||||||||| ||||    
T  817 ccagaagctcatccttcaggtattccttctattcctaaagcttcagccaatattcagactcct 755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 191 - 269
Target Start/End: Complemental strand, 130098 - 130020
Alignment:
Q  191 ccagcaacagaagcagctagatcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcaga 269  Q
    |||||| ||||||| ||||||||||||||||| |||||||||||| ||||| ||||||||||| || ||||| ||||||    
T  130098 ccagcatcagaagctgctagatcagaagctcatccttcaggtatttcttcagatccaaaagctcaattcaatgttcaga 130020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 21868 - 21693
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| || ||||||||||||||| | | |||||| |||| |||||  ||||| || || |||||| || | ||||| |||||||| | |||    
T  21868 gagatgaacagctcaaggcagcagggtatgagcttgctcctgagaaagctgctgtcattgcttccttggctgctaaactggaagaggaaactgtcaagga 21769  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagct 190  Q
    ||||||  |  | |||||||| || |||||||| |||||| |||||||||   |  ||||||||||| |||||||||||    
T  21768 aggagcagccctattaagacatgccctgaaaggaaagcatacttcaggag---cttcttcagaaccagcatcaaaagct 21693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 16781 - 16606
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| || |||||| |||||||| | | |||||| |||| |||||  ||||| || || |||||| || | ||||| |||||||| | |||    
T  16781 gagatgaacagctcaaggcagcatggtatgagcttgctcctgagaaagctgctgtcattgcttccttggctgctaaactggaagaggaaactgtcaagga 16682  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagct 190  Q
    ||||||  |  | |||||||| || |||||||| |||||| |||||||||   |  ||||||||||| |||||||||||    
T  16681 aggagcagccctattaagacatgccctgaaaggaaagcatacttcaggag---cttcttcagaaccagcatcaaaagct 16606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 3835405 - 3835270
Alignment:
Q  12 gagatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttaggga 111  Q
    ||||||||||||| ||||||||||||| |||  ||||| |||| |||| |||||  ||||| ||| ||||||||||| |||||||| |||| |||| |||    
T  3835405 gagatgaacagctcaaagcagcagggtttgatctggatgctgagaaagctgctgagattgcttctctagctgctgaactagaagaacaaacagttaagga 3835306  T
Q  112 aggagcgtctatgttaagacaagcactgaaaggtaa 147  Q
     ||| |  || |||||| | |||| |||||||||||    
T  3835305 gggaactgctttgttaaaagaagctctgaaaggtaa 3835270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 18156218 - 18156149
Alignment:
Q  212 tcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaatattcagattcctgaccttc 281  Q
    |||||||||||  | |||||||||||||| || || ||||||| ||||||||||||||||| ||||||||    
T  18156218 tcagaagctcattcatcaggtattccttctcaacctaaagctagagtcaatattcagattcttgaccttc 18156149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 3835236 - 3835191
Alignment:
Q  208 tagatcagaagctcagccttcaggtattccttcacatccaaaagct 253  Q
    ||||||||||||||| |||||||||| | ||||| |||||||||||    
T  3835236 tagatcagaagctcatccttcaggtaattcttcagatccaaaagct 3835191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 28464 - 28393
Alignment:
Q  191 ccagcaacagaagcagctagatcagaagctcagccttcaggtattccttcacatccaaaagctaaagtcaat 262  Q
    |||||| ||||||| |||| ||||||||||||||||||||||||| ||||| |||| ||||| ||| |||||    
T  28464 ccagcatcagaagctgctaaatcagaagctcagccttcaggtatttcttcaaatcctaaagcgaaaatcaat 28393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 28627 - 28450
Alignment:
Q  13 agatgaacagctaaaagcagcagggtatgagatggatcctgaaaaagttgctgctattgcctctttagctgctgaattagaagaagaaactgttagggaa 112  Q
    ||||||| ||||||||||||||||||||||| |  || |||| |||| |||||  || || ||  ||||||||||  | |||||| ||| ||||| ||||    
T  28627 agatgaaaagctaaaagcagcagggtatgagctaaatgctgagaaagctgctgtgatcgcttcactagctgctgagattgaagaacaaaatgttaaggaa 28528  T
Q  113 ggagcgtctatgttaagacaagcactgaaaggtaagcatgcttcaggagcaacaccttcagaaccaacatcaaaagct 190  Q
    ||| |  || |||||| ||| || ||||||| |||| | | ||||||||||| ||  ||||||||| ||||| |||||    
T  28527 ggaactgctttgttaaaacaggctctgaaagctaagaacgtttcaggagcaaaacaatcagaaccagcatcagaagct 28450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0670 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0670
Description:

Target: scaffold0670; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 2039 - 2096
Alignment:
Q  198 cagaagcagctagatcagaagctcagccttcaggtattccttcacatccaaaagctaa 255  Q
    ||||||| || |||||||||||||| |||||||||||||||||| ||||| |||||||    
T  2039 cagaagctgcaagatcagaagctcatccttcaggtattccttcagatccacaagctaa 2096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University