View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10217_low_5 (Length: 254)
Name: NF10217_low_5
Description: NF10217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10217_low_5 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 28504023 - 28504234
Alignment:
| Q |
1 |
aaatccaaaccctaagtaactaaaaagatcatttctaacatctcgatttataggaataatatgttttataagcaaattcttatgtaccctgaaatttggt |
100 |
Q |
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| T |
28504023 |
aaatccaaaccctaagtaactaaaaagatcatttctaaaattccgatttataggaataatatgttttataagcaaattcttatgtaccctgaaatttggt |
28504122 |
T |
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| Q |
101 |
ttgataacagtacctcgtagacataatttgttcaaaatttagtttcatctttaaataaattaatacaaaaatatgacatgatgtgtaataattaaatggt |
200 |
Q |
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| T |
28504123 |
ttgataacattatcccgtagacataactcgttcaaaatttagtttcatctttaaataaattaatacaaaaatataacatgatgtttaataattaaatggt |
28504222 |
T |
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| Q |
201 |
gggtacatatcc |
212 |
Q |
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|||||||||||| |
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| T |
28504223 |
gggtacatatcc |
28504234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 180
Target Start/End: Complemental strand, 1589026 - 1588995
Alignment:
| Q |
149 |
ctttaaataaattaatacaaaaatatgacatg |
180 |
Q |
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| T |
1589026 |
ctttaaataaattaatacaaaaatatgacatg |
1588995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 180
Target Start/End: Original strand, 46939050 - 46939079
Alignment:
| Q |
151 |
ttaaataaattaatacaaaaatatgacatg |
180 |
Q |
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| T |
46939050 |
ttaaataaattaatacaaaaatatgacatg |
46939079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 9948 - 9888
Alignment:
| Q |
150 |
tttaaataaattaatacaaaaatatgacatgatgtgtaataattaaatggtgggtacatat |
210 |
Q |
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| T |
9948 |
tttaaataaattaatataaaaatatgacatgacgttgaataatttgatgattggtacatat |
9888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 41360138 - 41360170
Alignment:
| Q |
150 |
tttaaataaattaatacaaaaatatgacatgat |
182 |
Q |
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| T |
41360138 |
tttaaataaattaatacaaaaatatgatatgat |
41360170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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