View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10218_high_11 (Length: 312)
Name: NF10218_high_11
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 34613529 - 34613785
Alignment:
| Q |
18 |
caaccatatataatataacgtctctttcaaatgagatatgtcacggagacaacgattacttgtttttaattgatatgcaattagttatttttatttatat |
117 |
Q |
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| T |
34613529 |
caaccatatataatataatgtctctttcaaatgagatatgtcacggagacaacgaatacttgtttttaattgatatgcaattagttatttttatttatat |
34613628 |
T |
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| Q |
118 |
ttgagtcgggaagataatgaagtatgagagttttacacgtgaggctcaatttgtctaagggtgtttttgatatataatactctagagaacatggagaaca |
217 |
Q |
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| T |
34613629 |
ttgagtcgggaagataatgaagtatgagagttttacacgtgaggctcaatttgtctaagggtgtttttgatatataatactctagagaacatggagaaca |
34613728 |
T |
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| Q |
218 |
acaaatcatggactttgtttacgacgcaaattttggccacaaacagaattcatgtga |
274 |
Q |
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| T |
34613729 |
acaaatcatggactttttttacgatgcaaattttggccacaaacagaattcatgtga |
34613785 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 9246575 - 9246472
Alignment:
| Q |
116 |
atttgagtcgggaagataatgaagtatgagagttttacacgtgaggctcaatttgtctaagggtgtttttgatatataatactctagagaacatggagaa |
215 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| | | ||||||| | || || |||||||||| || |
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| T |
9246575 |
atttgagtcaggaagataatgaagtatgagagttttacatgtgacaaacaatttgtctaagggtgtgtctaatatatattgctgtaaagaacatggaaaa |
9246476 |
T |
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| Q |
216 |
caac |
219 |
Q |
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|||| |
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| T |
9246475 |
caac |
9246472 |
T |
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