View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10218_high_13 (Length: 292)
Name: NF10218_high_13
Description: NF10218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10218_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 42093617 - 42093808
Alignment:
| Q |
15 |
aacatacaaaaggcaccggatatgagcggctaacctcaagacaatcaccaaaaaagtataagccccctgtcaatacacacacaccctactaatcccagct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
42093617 |
aacatacaaaaggcaccggatatgagcggctaacctcaagacaatcaccaaaa--gtataagccccctgtcaatacac--acaccctaccaatcccagct |
42093712 |
T |
|
| Q |
115 |
gcctgcccgaaagaccagcagcacagctgagggaaaaacggaaaaacagcaacgnnnnnnnncacaggaaaacaccaacagagaggttcctgaaaaa |
211 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42093713 |
gcatacccgaaagaccagcagcacagctgagggaaaaacggaaaaacagcagcg-aaaaaaacacaggaaaacaccaacagagaggttcctgaaaaa |
42093808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 42094744 - 42094815
Alignment:
| Q |
205 |
tgaaaaataatagcagattcatatgttcatttcaaaaaccaatatcatatgttaaataattaagaggtaatt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42094744 |
tgaaaaataatagcagattcatatgttcatttcaaaaaccaatatcatatgttaaataattaagaggtaatt |
42094815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 6774392 - 6774515
Alignment:
| Q |
16 |
acatacaaaaggcaccggatatgagcggctaacctcaagacaatcaccaaaaaagtataagccccctgtcaatacacacacac-cctactaatcccagct |
114 |
Q |
| |
|
||||||||||||| | |||||| || ||||||||||||||||||||| ||| | ||||| |||||||||||||||| || | || |||||||| |||| |
|
|
| T |
6774392 |
acatacaaaaggccctggatatatgcagctaacctcaagacaatcacc--aaatgaataag-cccctgtcaatacacagacccaccaactaatccaagct |
6774488 |
T |
|
| Q |
115 |
gcctgcccgaaagaccagcagcacagc |
141 |
Q |
| |
|
|||| ||| ||| |||||||||||||| |
|
|
| T |
6774489 |
gcctacccaaaaaaccagcagcacagc |
6774515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 1660907 - 1660962
Alignment:
| Q |
205 |
tgaaaaataatagcagattcatatgttcatttcaaaaaccaatatcatatgttaaa |
260 |
Q |
| |
|
|||||||| ||| ||||||||||||||| ||||||| ||||| | ||||||||||| |
|
|
| T |
1660907 |
tgaaaaattataacagattcatatgttcctttcaaacaccaaaaccatatgttaaa |
1660962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 35164154 - 35164099
Alignment:
| Q |
205 |
tgaaaaataatagcagattcatatgttcatttcaaaaaccaatatcatatgttaaa |
260 |
Q |
| |
|
|||||||| ||| ||||||||||||||| ||||||| ||||| | ||||||||||| |
|
|
| T |
35164154 |
tgaaaaattataacagattcatatgttcctttcaaacaccaaaaccatatgttaaa |
35164099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University